| http://purl.uniprot.org/unirules/MF_00281#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:113950 up:source unirule:MF_00281 .
_:113951 up:source unirule:MF_00281 .
_:113952 up:source unirule:MF_00281 .
_:113953 up:source unirule:MF_00281 .
_:113954 up:source unirule:MF_00281 .
_:113955 up:source unirule:MF_00281 .
_:113956 up:source unirule:MF_00281 .
_:113957 up:source unirule:MF_00281 .
_:113958 up:source unirule:MF_00281 .
_:113959 up:source unirule:MF_00281 .
_:113960 up:source unirule:MF_00281 .
_:113961 up:source unirule:MF_00281 .
_:113962 up:source unirule:MF_00281 .
_:113963 up:source unirule:MF_00281 .
_:113964 up:source unirule:MF_00281 .
_:113965 up:source unirule:MF_00281 .
_:113966 up:source unirule:MF_00281 .
_:113967 up:source unirule:MF_00281 .
_:113968 up:source unirule:MF_00281 .
_:113969 up:source unirule:MF_00281 .
_:113970 up:source unirule:MF_00281 .
_:113971 up:source unirule:MF_00281 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0000287 ,
GO:0004826 ,
GO:0005524 ,
GO:0005737 ,
GO:0006432 ,
keyword:30 ,
keyword:436 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:648 ,
keyword:67 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.1.1.20' ;
up:fullName 'Phenylalanine--tRNA ligase alpha subunit' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Phenylalanyl-tRNA synthetase alpha subunit' ;
up:shortName 'PheRS' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'pheS' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 magnesium ions per tetramer.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Tetramer of two alpha and two beta subunits.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:18420 .
_:113972 a rdf:Statement ;
up:attribution _:113950 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:113973 a rdf:Statement ;
up:attribution _:113951 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:113974 a rdf:Statement ;
up:attribution _:113952 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:113975 a rdf:Statement ;
up:attribution _:113953 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:113976 a rdf:Statement ;
up:attribution _:113954 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:113977 a rdf:Statement ;
up:attribution _:113955 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:113978 a rdf:Statement ;
up:attribution _:113956 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:113979 a rdf:Statement ;
up:attribution _:113957 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:113980 a rdf:Statement ;
up:attribution _:113958 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:113981 a rdf:Statement ;
up:attribution _:113959 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:30 .
_:113982 a rdf:Statement ;
up:attribution _:113960 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:113983 a rdf:Statement ;
up:attribution _:113961 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:113984 a rdf:Statement ;
up:attribution _:113962 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:113985 a rdf:Statement ;
up:attribution _:113963 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:113986 a rdf:Statement ;
up:attribution _:113964 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:113987 a rdf:Statement ;
up:attribution _:113965 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:113988 a rdf:Statement ;
up:attribution _:113966 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:113989 a rdf:Statement ;
up:attribution _:113967 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:113990 a rdf:Statement ;
up:attribution _:113968 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004826 .
_:113991 a rdf:Statement ;
up:attribution _:113969 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006432 .
_:113992 a rdf:Statement ;
up:attribution _:113970 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:113993 a rdf:Statement ;
up:source unirule:MF_00281 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:113994 a rdf:Statement ;
up:attribution _:113971 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00281
#Rule MF_00281 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00281 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00281a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00281a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00281a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00281a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00281a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00281a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00281a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch21 faldo:location ?templateMotifSequenceMatchRegionP2700122 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2700124 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27001MF_0028117 .
?templateMotifSequenceMatchRegionP2700122 faldo:begin ?templateMotifSequenceMatchBeginP2700123 .
?templateMotifSequenceMatchBeginP2700123 faldo:position ?templateMotifSequenceMatchBeginPositionP2700118 ;
faldo:reference isoform:P27001-1 .
?templateMotifSequenceProfileAlignmentOperationP2700124 edam:has_input signature:MF_00281 ;
rdf:type edam:operation_0300 .
?targetMotifMatch25 faldo:location ?targetMotifMatchRegionMatch26 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0028128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27001MF_0028119 .
?targetMotifMatchRegionMatch26 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0028127 .
?targetMotifMatchRegionMatchBeginMF_0028127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0028120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0028128 edam:has_input signature:MF_00281 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27001MF_0028117, 1, (STRLEN(?templateMotifCigarP27001MF_0028117) - STRLEN(REPLACE(?templateMotifCigarP27001MF_0028117, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionP2700118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27001MF_0028119, 1, (STRLEN(?targetMotifMatchCigarP27001MF_0028119) - STRLEN(REPLACE(?targetMotifMatchCigarP27001MF_0028119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27001MF_0028119, 1, (STRLEN(?targetMotifMatchCigarP27001MF_0028119) - STRLEN(REPLACE(?targetMotifMatchCigarP27001MF_0028119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0028120) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00281a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
}
"xsd:string |
