| http://purl.uniprot.org/unirules/MF_00454#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:180837 up:source unirule:MF_00454 .
_:180838 up:source unirule:MF_00454 .
_:180839 up:source unirule:MF_00454 .
_:180840 up:source unirule:MF_00454 .
_:180841 up:source unirule:MF_00454 .
_:180842 up:source unirule:MF_00454 .
_:180843 up:source unirule:MF_00454 .
_:180844 up:source unirule:MF_00454 .
_:180845 up:source unirule:MF_00454 .
_:180846 up:source unirule:MF_00454 .
_:180847 up:source unirule:MF_00454 .
_:180848 up:source unirule:MF_00454 .
_:180849 up:source unirule:MF_00454 .
_:180850 up:source unirule:MF_00454 .
_:180851 up:source unirule:MF_00454 .
_:180852 up:source unirule:MF_00454 .
_:180853 up:source unirule:MF_00454 .
_:180854 up:source unirule:MF_00454 .
_:180855 up:source unirule:MF_00454 .
_:180856 up:source unirule:MF_00454 .
_:180857 up:source unirule:MF_00454 .
_:180858 up:source unirule:MF_00454 .
_:180859 up:source unirule:MF_00454 .
_:180860 up:source unirule:MF_00454 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0005886 ,
GO:0062054 ,
GO:0140114 ,
GO:1903424 ,
keyword:1003 ,
keyword:1133 ,
keyword:406 ,
keyword:407 ,
keyword:472 ,
keyword:812 ,
keyword:813 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Fluoride-specific ion channel FluC' ;
rdf:type up:Structured_Name .
?gene1 skos:altLabel 'crcB' ;
skos:prefLabel 'fluC' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Fluoride-specific ion channel. Important for reducing fluoride concentration in the cell, thus reducing its toxicity.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the fluoride channel Fluc/FEX (TC 1.A.43) family.' .
?case6 up:classifiedWith keyword:479 ,
keyword:915 .
?case7 up:classifiedWith keyword:997 .
?pfs9 up:annotation ?annotation10 ,
?annotation16 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:29101 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:29101 .
?sam22 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane23 faldo:begin ?transmembraneb24 ;
faldo:end ?transmembranee25 .
?transmembraneb24 faldo:position ?transmembranebp26 .
?transmembranee25 faldo:position ?transmembraneep27 .
?keyword28 up:range ?transmembrane23 .
?keyword29 up:range ?transmembrane23 .
?keyword30 up:range ?transmembrane23 .
_:180861 a rdf:Statement ;
up:attribution _:180837 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:180862 a rdf:Statement ;
up:attribution _:180838 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:180863 a rdf:Statement ;
up:attribution _:180839 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:180864 a rdf:Statement ;
up:attribution _:180840 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:180865 a rdf:Statement ;
up:attribution _:180841 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:180866 a rdf:Statement ;
up:attribution _:180842 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:180867 a rdf:Statement ;
up:attribution _:180843 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:407 .
_:180868 a rdf:Statement ;
up:attribution _:180844 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:406 .
_:180869 a rdf:Statement ;
up:attribution _:180845 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:180870 a rdf:Statement ;
up:attribution _:180846 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:180871 a rdf:Statement ;
up:attribution _:180847 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:180872 a rdf:Statement ;
up:attribution _:180848 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:180873 a rdf:Statement ;
up:attribution _:180849 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0062054 .
_:180874 a rdf:Statement ;
up:attribution _:180850 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0140114 .
_:180875 a rdf:Statement ;
up:attribution _:180851 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:1903424 .
_:180876 a rdf:Statement ;
up:attribution _:180852 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:180877 a rdf:Statement ;
up:attribution _:180853 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:915 .
_:180878 a rdf:Statement ;
up:attribution _:180854 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:180879 a rdf:Statement ;
up:attribution _:180855 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:180880 a rdf:Statement ;
up:source unirule:MF_00454 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:180881 a rdf:Statement ;
up:attribution _:180856 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:180882 a rdf:Statement ;
up:source unirule:MF_00454 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:180883 a rdf:Statement ;
up:attribution _:180857 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:180884 a rdf:Statement ;
up:attribution _:180858 ;
rdf:subject ?sam22 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:180885 a rdf:Statement ;
up:attribution _:180859 ;
rdf:subject ?sam22 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:180886 a rdf:Statement ;
up:attribution _:180860 ;
rdf:subject ?sam22 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00454
#Rule MF_00454 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-11-28
VALUES ?supertaxon31 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00454 .
?thisOrganism rdfs:subClassOf+ ?supertaxon31 .
BIND(URI(CONCAT(STR(?this), '#MF_00454a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00454a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00454a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00454a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch36 faldo:location ?templateMotifSequenceMatchRegionQ7VYU037 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7VYU039 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7VYU0MF_0045432 .
?templateMotifSequenceMatchRegionQ7VYU037 faldo:begin ?templateMotifSequenceMatchBeginQ7VYU038 .
?templateMotifSequenceMatchBeginQ7VYU038 faldo:position ?templateMotifSequenceMatchBeginPositionQ7VYU033 ;
faldo:reference isoform:Q7VYU0-1 .
?templateMotifSequenceProfileAlignmentOperationQ7VYU039 edam:has_input signature:MF_00454 ;
rdf:type edam:operation_0300 .
?targetMotifMatch40 faldo:location ?targetMotifMatchRegionMatch41 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0045443 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7VYU0MF_0045434 .
?targetMotifMatchRegionMatch41 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0045442 .
?targetMotifMatchRegionMatchBeginMF_0045442 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0045435 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0045443 edam:has_input signature:MF_00454 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7VYU0MF_0045432, 1, (STRLEN(?templateMotifCigarQ7VYU0MF_0045432) - STRLEN(REPLACE(?templateMotifCigarQ7VYU0MF_0045432, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionQ7VYU033) + 1)), '}'), '')))), '[a-z]', '')) AS ?step144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7VYU0MF_0045434, 1, (STRLEN(?targetMotifMatchCigarQ7VYU0MF_0045434) - STRLEN(REPLACE(?targetMotifMatchCigarQ7VYU0MF_0045434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7VYU0MF_0045434, 1, (STRLEN(?targetMotifMatchCigarQ7VYU0MF_0045434) - STRLEN(REPLACE(?targetMotifMatchCigarQ7VYU0MF_0045434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), '')))), '[^-]', ''))) AS ?step245) .
BIND(((?step245 + ?targetMotifMatchRegionMatchBeginPositionMF_0045435) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'G')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7VYU0MF_0045432, 1, (STRLEN(?templateMotifCigarQ7VYU0MF_0045432) - STRLEN(REPLACE(?templateMotifCigarQ7VYU0MF_0045432, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionQ7VYU033) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7VYU0MF_0045434, 1, (STRLEN(?targetMotifMatchCigarQ7VYU0MF_0045434) - STRLEN(REPLACE(?targetMotifMatchCigarQ7VYU0MF_0045434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7VYU0MF_0045434, 1, (STRLEN(?targetMotifMatchCigarQ7VYU0MF_0045434) - STRLEN(REPLACE(?targetMotifMatchCigarQ7VYU0MF_0045434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0045435) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1))) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag50) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag50, ?UNBOUND_VARIABLE) AS ?case6) .
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p51 .
?p51 skos:narrower .
}
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
{
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p52 .
?p52 skos:narrower .
}
})) .
} UNION {
{
?this up:proteome .
} UNION {
?this up:proteome ?p53 .
?p53 skos:narrower .
}
}
BIND(?this AS ?case8) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane54 ;
up:sequence ?thisSequence .
?samtransmembrane54 up:range ?samtransmembraner55 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner55 faldo:begin ?samtransmembraneb56 ;
faldo:end ?samtransmembranee57 .
?samtransmembraneb56 faldo:position ?samtransmembranebp58 ;
faldo:reference ?thisSequence .
?samtransmembranee57 faldo:position ?samtransmembraneep59 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam22) .
}
BIND(URI(CONCAT(STR(?this), '#MF_00454a28')) AS ?keyword28) .
BIND(URI(CONCAT(STR(?this), '#MF_00454a29')) AS ?keyword29) .
BIND(URI(CONCAT(STR(?this), '#MF_00454a30')) AS ?keyword30) .
}
"xsd:string |
