| http://purl.uniprot.org/unirules/MF_00510#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:202000 up:source unirule:MF_00510 .
_:202001 up:source unirule:MF_00510 .
_:202002 up:source unirule:MF_00510 .
_:202003 up:source unirule:MF_00510 .
_:202004 up:source unirule:MF_00510 .
_:202005 up:source unirule:MF_00510 .
_:202006 up:source unirule:MF_00510 .
_:202007 up:source unirule:MF_00510 .
_:202008 up:source unirule:MF_00510 .
_:202009 up:source unirule:MF_00510 .
_:202010 up:source unirule:MF_00510 .
_:202011 up:source unirule:MF_00510 .
_:202012 up:source unirule:MF_00510 .
_:202013 up:source unirule:MF_00510 .
_:202014 up:source unirule:MF_00510 .
_:202015 up:source unirule:MF_00510 .
_:202016 up:source unirule:MF_00510 .
_:202017 up:source unirule:MF_00510 .
_:202018 up:source unirule:MF_00510 .
_:202019 up:source unirule:MF_00510 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0005737 ,
GO:0006508 ,
GO:0016805 ,
keyword:224 ,
keyword:378 ,
keyword:645 ,
keyword:720 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.4.13.21' ;
up:fullName 'Peptidase E' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Alpha-aspartyl dipeptidase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Asp-specific dipeptidase' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Dipeptidase E' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'pepE' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:enzymeClass .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase S51 family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
_:202020 a rdf:Statement ;
up:attribution _:202000 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:202021 a rdf:Statement ;
up:attribution _:202001 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:202022 a rdf:Statement ;
up:attribution _:202002 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:202023 a rdf:Statement ;
up:attribution _:202003 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:202024 a rdf:Statement ;
up:attribution _:202004 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:202025 a rdf:Statement ;
up:attribution _:202005 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:202026 a rdf:Statement ;
up:attribution _:202006 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:202027 a rdf:Statement ;
up:attribution _:202007 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:202028 a rdf:Statement ;
up:attribution _:202008 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:202029 a rdf:Statement ;
up:attribution _:202009 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:202030 a rdf:Statement ;
up:attribution _:202010 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:202031 a rdf:Statement ;
up:attribution _:202011 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:645 .
_:202032 a rdf:Statement ;
up:attribution _:202012 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:720 .
_:202033 a rdf:Statement ;
up:attribution _:202013 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:224 .
_:202034 a rdf:Statement ;
up:attribution _:202014 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016805 .
_:202035 a rdf:Statement ;
up:attribution _:202015 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006508 .
_:202036 a rdf:Statement ;
up:attribution _:202016 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:202037 a rdf:Statement ;
up:source unirule:MF_00510 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:202038 a rdf:Statement ;
up:attribution _:202017 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:202039 a rdf:Statement ;
up:source unirule:MF_00510 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:202040 a rdf:Statement ;
up:attribution _:202018 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:202041 a rdf:Statement ;
up:source unirule:MF_00510 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:202042 a rdf:Statement ;
up:attribution _:202019 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00510
#Rule MF_00510 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2019-11-18
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00510 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00510a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00510a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00510a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00510a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_00510a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00510a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00510a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00510a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch33 faldo:location ?templateMotifSequenceMatchRegionP3693634 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3693636 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36936MF_0051029 .
?templateMotifSequenceMatchRegionP3693634 faldo:begin ?templateMotifSequenceMatchBeginP3693635 .
?templateMotifSequenceMatchBeginP3693635 faldo:position ?templateMotifSequenceMatchBeginPositionP3693630 ;
faldo:reference isoform:P36936-1 .
?templateMotifSequenceProfileAlignmentOperationP3693636 edam:has_input signature:MF_00510 ;
rdf:type edam:operation_0300 .
?targetMotifMatch37 faldo:location ?targetMotifMatchRegionMatch38 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0051040 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36936MF_0051031 .
?targetMotifMatchRegionMatch38 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0051039 .
?targetMotifMatchRegionMatchBeginMF_0051039 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0051032 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0051040 edam:has_input signature:MF_00510 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36936MF_0051029, 1, (STRLEN(?templateMotifCigarP36936MF_0051029) - STRLEN(REPLACE(?templateMotifCigarP36936MF_0051029, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionP3693630) + 1)), '}'), '')))), '[a-z]', '')) AS ?step141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36936MF_0051031, 1, (STRLEN(?targetMotifMatchCigarP36936MF_0051031) - STRLEN(REPLACE(?targetMotifMatchCigarP36936MF_0051031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36936MF_0051031, 1, (STRLEN(?targetMotifMatchCigarP36936MF_0051031) - STRLEN(REPLACE(?targetMotifMatchCigarP36936MF_0051031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), '')))), '[^-]', ''))) AS ?step242) .
BIND(((?step242 + ?targetMotifMatchRegionMatchBeginPositionMF_0051032) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00510a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch48 faldo:location ?templateMotifSequenceMatchRegionP3693649 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3693651 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36936MF_0051044 .
?templateMotifSequenceMatchRegionP3693649 faldo:begin ?templateMotifSequenceMatchBeginP3693650 .
?templateMotifSequenceMatchBeginP3693650 faldo:position ?templateMotifSequenceMatchBeginPositionP3693645 ;
faldo:reference isoform:P36936-1 .
?templateMotifSequenceProfileAlignmentOperationP3693651 edam:has_input signature:MF_00510 ;
rdf:type edam:operation_0300 .
?targetMotifMatch52 faldo:location ?targetMotifMatchRegionMatch53 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0051055 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36936MF_0051046 .
?targetMotifMatchRegionMatch53 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0051054 .
?targetMotifMatchRegionMatchBeginMF_0051054 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0051047 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0051055 edam:has_input signature:MF_00510 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36936MF_0051044, 1, (STRLEN(?templateMotifCigarP36936MF_0051044) - STRLEN(REPLACE(?templateMotifCigarP36936MF_0051044, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionP3693645) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36936MF_0051046, 1, (STRLEN(?targetMotifMatchCigarP36936MF_0051046) - STRLEN(REPLACE(?targetMotifMatchCigarP36936MF_0051046, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36936MF_0051046, 1, (STRLEN(?targetMotifMatchCigarP36936MF_0051046) - STRLEN(REPLACE(?targetMotifMatchCigarP36936MF_0051046, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0051047) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00510a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionP3693664 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3693666 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36936MF_0051059 .
?templateMotifSequenceMatchRegionP3693664 faldo:begin ?templateMotifSequenceMatchBeginP3693665 .
?templateMotifSequenceMatchBeginP3693665 faldo:position ?templateMotifSequenceMatchBeginPositionP3693660 ;
faldo:reference isoform:P36936-1 .
?templateMotifSequenceProfileAlignmentOperationP3693666 edam:has_input signature:MF_00510 ;
rdf:type edam:operation_0300 .
?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0051070 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36936MF_0051061 .
?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0051069 .
?targetMotifMatchRegionMatchBeginMF_0051069 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0051062 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0051070 edam:has_input signature:MF_00510 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36936MF_0051059, 1, (STRLEN(?templateMotifCigarP36936MF_0051059) - STRLEN(REPLACE(?templateMotifCigarP36936MF_0051059, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionP3693660) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36936MF_0051061, 1, (STRLEN(?targetMotifMatchCigarP36936MF_0051061) - STRLEN(REPLACE(?targetMotifMatchCigarP36936MF_0051061, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36936MF_0051061, 1, (STRLEN(?targetMotifMatchCigarP36936MF_0051061) - STRLEN(REPLACE(?targetMotifMatchCigarP36936MF_0051061, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0051062) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00510a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
}
"xsd:string |
