| http://purl.uniprot.org/unirules/MF_00519#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:204189 up:source unirule:MF_00519 .
_:204190 up:source unirule:MF_00519 .
_:204191 up:source unirule:MF_00519 .
_:204192 up:source unirule:MF_00519 .
_:204193 up:source unirule:MF_00519 .
_:204194 up:source unirule:MF_00519 .
_:204195 up:source unirule:MF_00519 .
_:204196 up:source unirule:MF_00519 .
_:204197 up:source unirule:MF_00519 .
_:204198 up:source unirule:MF_00519 .
_:204199 up:source unirule:MF_00519 .
_:204200 up:source unirule:MF_00519 .
_:204201 up:source unirule:MF_00519 .
_:204202 up:source unirule:MF_00519 .
_:204203 up:source unirule:MF_00519 .
_:204204 up:source unirule:MF_00519 .
_:204205 up:source unirule:MF_00519 .
_:204206 up:source unirule:MF_00519 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0008733 ,
GO:0019569 ,
keyword:119 ,
keyword:413 ,
keyword:54 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.3.1.4' ;
up:fullName 'L-arabinose isomerase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'araA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of L-arabinose to L-ribulose.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the arabinose isomerase family.' .
?case7 up:classifiedWith GO:0030145 ,
keyword:464 ,
keyword:479 .
?pfs9 up:annotation ?annotation10 ,
?annotation16 ,
?annotation22 ,
?annotation28 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:29035 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:29035 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:29035 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:29035 .
_:204207 a rdf:Statement ;
up:attribution _:204189 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:204208 a rdf:Statement ;
up:attribution _:204190 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:204209 a rdf:Statement ;
up:attribution _:204191 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:204210 a rdf:Statement ;
up:attribution _:204192 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:204211 a rdf:Statement ;
up:attribution _:204193 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:204212 a rdf:Statement ;
up:attribution _:204194 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:204213 a rdf:Statement ;
up:attribution _:204195 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:54 .
_:204214 a rdf:Statement ;
up:attribution _:204196 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:204215 a rdf:Statement ;
up:attribution _:204197 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:204216 a rdf:Statement ;
up:attribution _:204198 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008733 .
_:204217 a rdf:Statement ;
up:attribution _:204199 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019569 .
_:204218 a rdf:Statement ;
up:attribution _:204200 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:204219 a rdf:Statement ;
up:attribution _:204201 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:204220 a rdf:Statement ;
up:attribution _:204202 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030145 .
_:204221 a rdf:Statement ;
up:source unirule:MF_00519 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:204222 a rdf:Statement ;
up:attribution _:204203 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:204223 a rdf:Statement ;
up:source unirule:MF_00519 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:204224 a rdf:Statement ;
up:attribution _:204204 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:204225 a rdf:Statement ;
up:source unirule:MF_00519 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:204226 a rdf:Statement ;
up:attribution _:204205 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:204227 a rdf:Statement ;
up:source unirule:MF_00519 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:204228 a rdf:Statement ;
up:attribution _:204206 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00519
#Rule MF_00519 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-06-13
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00519 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00519a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00519a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00519a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00519a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00519a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch38 faldo:location ?templateMotifSequenceMatchRegionP0820239 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0820241 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08202MF_0051934 .
?templateMotifSequenceMatchRegionP0820239 faldo:begin ?templateMotifSequenceMatchBeginP0820240 .
?templateMotifSequenceMatchBeginP0820240 faldo:position ?templateMotifSequenceMatchBeginPositionP0820235 ;
faldo:reference isoform:P08202-1 .
?templateMotifSequenceProfileAlignmentOperationP0820241 edam:has_input signature:MF_00519 ;
rdf:type edam:operation_0300 .
?targetMotifMatch42 faldo:location ?targetMotifMatchRegionMatch43 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0051945 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08202MF_0051936 .
?targetMotifMatchRegionMatch43 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0051944 .
?targetMotifMatchRegionMatchBeginMF_0051944 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0051937 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0051945 edam:has_input signature:MF_00519 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08202MF_0051934, 1, (STRLEN(?templateMotifCigarP08202MF_0051934) - STRLEN(REPLACE(?templateMotifCigarP08202MF_0051934, CONCAT('^(?:-*[^-]){', STR(((306 - ?templateMotifSequenceMatchBeginPositionP0820235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08202MF_0051936, 1, (STRLEN(?targetMotifMatchCigarP08202MF_0051936) - STRLEN(REPLACE(?targetMotifMatchCigarP08202MF_0051936, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08202MF_0051936, 1, (STRLEN(?targetMotifMatchCigarP08202MF_0051936) - STRLEN(REPLACE(?targetMotifMatchCigarP08202MF_0051936, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), '')))), '[^-]', ''))) AS ?step247) .
BIND(((?step247 + ?targetMotifMatchRegionMatchBeginPositionMF_0051937) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08202MF_0051934, 1, (STRLEN(?templateMotifCigarP08202MF_0051934) - STRLEN(REPLACE(?templateMotifCigarP08202MF_0051934, CONCAT('^(?:-*[^-]){', STR(((333 - ?templateMotifSequenceMatchBeginPositionP0820235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08202MF_0051936, 1, (STRLEN(?targetMotifMatchCigarP08202MF_0051936) - STRLEN(REPLACE(?targetMotifMatchCigarP08202MF_0051936, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08202MF_0051936, 1, (STRLEN(?targetMotifMatchCigarP08202MF_0051936) - STRLEN(REPLACE(?targetMotifMatchCigarP08202MF_0051936, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) .
BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0051937) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08202MF_0051934, 1, (STRLEN(?templateMotifCigarP08202MF_0051934) - STRLEN(REPLACE(?templateMotifCigarP08202MF_0051934, CONCAT('^(?:-*[^-]){', STR(((350 - ?templateMotifSequenceMatchBeginPositionP0820235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08202MF_0051936, 1, (STRLEN(?targetMotifMatchCigarP08202MF_0051936) - STRLEN(REPLACE(?targetMotifMatchCigarP08202MF_0051936, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08202MF_0051936, 1, (STRLEN(?targetMotifMatchCigarP08202MF_0051936) - STRLEN(REPLACE(?targetMotifMatchCigarP08202MF_0051936, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0051937) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08202MF_0051934, 1, (STRLEN(?templateMotifCigarP08202MF_0051934) - STRLEN(REPLACE(?templateMotifCigarP08202MF_0051934, CONCAT('^(?:-*[^-]){', STR(((450 - ?templateMotifSequenceMatchBeginPositionP0820235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08202MF_0051936, 1, (STRLEN(?targetMotifMatchCigarP08202MF_0051936) - STRLEN(REPLACE(?targetMotifMatchCigarP08202MF_0051936, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08202MF_0051936, 1, (STRLEN(?targetMotifMatchCigarP08202MF_0051936) - STRLEN(REPLACE(?targetMotifMatchCigarP08202MF_0051936, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0051937) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'H')) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag58) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag58, ?UNBOUND_VARIABLE) AS ?case7) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case8) .
}
}
"xsd:string |
