| http://purl.uniprot.org/unirules/MF_00541#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:211251 up:source unirule:MF_00541 .
_:211252 up:source unirule:MF_00541 .
_:211253 up:source unirule:MF_00541 .
_:211254 up:source unirule:MF_00541 .
_:211255 up:source unirule:MF_00541 .
_:211256 up:source unirule:MF_00541 .
_:211257 up:source unirule:MF_00541 .
_:211258 up:source unirule:MF_00541 .
_:211259 up:source unirule:MF_00541 .
_:211260 up:source unirule:MF_00541 .
_:211261 up:source unirule:MF_00541 .
_:211262 up:source unirule:MF_00541 .
_:211263 up:source unirule:MF_00541 .
_:211264 up:source unirule:MF_00541 .
_:211265 up:source unirule:MF_00541 .
_:211266 up:source unirule:MF_00541 .
_:211267 up:source unirule:MF_00541 .
_:211268 up:source unirule:MF_00541 .
_:211269 up:source unirule:MF_00541 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0005737 ,
GO:0008740 ,
GO:0019301 ,
keyword:413 ,
keyword:684 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.3.1.14' ;
up:fullName 'L-rhamnose isomerase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'rhaA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the interconversion of L-rhamnose and L-rhamnulose.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; L-rhamnose degradation; glycerone phosphate from L-rhamnose: step 1/3.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the rhamnose isomerase family.' .
?case9 up:classifiedWith GO:0030145 ,
keyword:464 ,
keyword:479 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:29035 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29035 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29035 .
_:211270 a rdf:Statement ;
up:attribution _:211251 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:211271 a rdf:Statement ;
up:attribution _:211252 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:211272 a rdf:Statement ;
up:attribution _:211253 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:211273 a rdf:Statement ;
up:attribution _:211254 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:211274 a rdf:Statement ;
up:attribution _:211255 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:211275 a rdf:Statement ;
up:attribution _:211256 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:211276 a rdf:Statement ;
up:attribution _:211257 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:211277 a rdf:Statement ;
up:attribution _:211258 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:211278 a rdf:Statement ;
up:attribution _:211259 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:211279 a rdf:Statement ;
up:attribution _:211260 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:684 .
_:211280 a rdf:Statement ;
up:attribution _:211261 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008740 .
_:211281 a rdf:Statement ;
up:attribution _:211262 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019301 .
_:211282 a rdf:Statement ;
up:attribution _:211263 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:211283 a rdf:Statement ;
up:attribution _:211264 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:211284 a rdf:Statement ;
up:attribution _:211265 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:211285 a rdf:Statement ;
up:attribution _:211266 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030145 .
_:211286 a rdf:Statement ;
up:source unirule:MF_00541 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:211287 a rdf:Statement ;
up:attribution _:211267 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:211288 a rdf:Statement ;
up:source unirule:MF_00541 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:211289 a rdf:Statement ;
up:attribution _:211268 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:211290 a rdf:Statement ;
up:source unirule:MF_00541 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:211291 a rdf:Statement ;
up:attribution _:211269 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00541
#Rule MF_00541 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-03-12
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00541 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00541a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00541a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00541a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00541a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00541a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00541a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch34 faldo:location ?templateMotifSequenceMatchRegionP3217035 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3217037 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32170MF_0054130 .
?templateMotifSequenceMatchRegionP3217035 faldo:begin ?templateMotifSequenceMatchBeginP3217036 .
?templateMotifSequenceMatchBeginP3217036 faldo:position ?templateMotifSequenceMatchBeginPositionP3217031 ;
faldo:reference isoform:P32170-1 .
?templateMotifSequenceProfileAlignmentOperationP3217037 edam:has_input signature:MF_00541 ;
rdf:type edam:operation_0300 .
?targetMotifMatch38 faldo:location ?targetMotifMatchRegionMatch39 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0054141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32170MF_0054132 .
?targetMotifMatchRegionMatch39 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0054140 .
?targetMotifMatchRegionMatchBeginMF_0054140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0054133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0054141 edam:has_input signature:MF_00541 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32170MF_0054130, 1, (STRLEN(?templateMotifCigarP32170MF_0054130) - STRLEN(REPLACE(?templateMotifCigarP32170MF_0054130, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionP3217031) + 1)), '}'), '')))), '[a-z]', '')) AS ?step142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32170MF_0054132, 1, (STRLEN(?targetMotifMatchCigarP32170MF_0054132) - STRLEN(REPLACE(?targetMotifMatchCigarP32170MF_0054132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32170MF_0054132, 1, (STRLEN(?targetMotifMatchCigarP32170MF_0054132) - STRLEN(REPLACE(?targetMotifMatchCigarP32170MF_0054132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), '')))), '[^-]', ''))) AS ?step243) .
BIND(((?step243 + ?targetMotifMatchRegionMatchBeginPositionMF_0054133) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32170MF_0054130, 1, (STRLEN(?templateMotifCigarP32170MF_0054130) - STRLEN(REPLACE(?templateMotifCigarP32170MF_0054130, CONCAT('^(?:-*[^-]){', STR(((294 - ?templateMotifSequenceMatchBeginPositionP3217031) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32170MF_0054132, 1, (STRLEN(?targetMotifMatchCigarP32170MF_0054132) - STRLEN(REPLACE(?targetMotifMatchCigarP32170MF_0054132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32170MF_0054132, 1, (STRLEN(?targetMotifMatchCigarP32170MF_0054132) - STRLEN(REPLACE(?targetMotifMatchCigarP32170MF_0054132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0054133) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32170MF_0054130, 1, (STRLEN(?templateMotifCigarP32170MF_0054130) - STRLEN(REPLACE(?templateMotifCigarP32170MF_0054130, CONCAT('^(?:-*[^-]){', STR(((296 - ?templateMotifSequenceMatchBeginPositionP3217031) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32170MF_0054132, 1, (STRLEN(?targetMotifMatchCigarP32170MF_0054132) - STRLEN(REPLACE(?targetMotifMatchCigarP32170MF_0054132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32170MF_0054132, 1, (STRLEN(?targetMotifMatchCigarP32170MF_0054132) - STRLEN(REPLACE(?targetMotifMatchCigarP32170MF_0054132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0054133) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'D')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag51) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag51, ?UNBOUND_VARIABLE) AS ?case9) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case10) .
}
}
"xsd:string |
