| http://purl.uniprot.org/unirules/MF_00549#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:213749 up:source unirule:MF_00549 .
_:213750 up:source unirule:MF_00549 .
_:213751 up:source unirule:MF_00549 .
_:213752 up:source unirule:MF_00549 .
_:213753 up:source unirule:MF_00549 .
_:213754 up:source unirule:MF_00549 .
_:213755 up:source unirule:MF_00549 .
_:213756 up:source unirule:MF_00549 .
_:213757 up:source unirule:MF_00549 .
_:213758 up:source unirule:MF_00549 .
_:213759 up:source unirule:MF_00549 .
_:213760 up:source unirule:MF_00549 .
_:213761 up:source unirule:MF_00549 .
_:213762 up:source unirule:MF_00549 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0008929 ,
GO:0019242 ,
keyword:456 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.3.3' ;
up:fullName 'Methylglyoxal synthase' ;
up:shortName 'MGS' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'mgsA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the methylglyoxal synthase family.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
up:ligand ?ligand10 ;
rdf:type up:Binding_Site_Annotation .
?pfsb8 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand10 rdfs:subClassOf ?molecule11 .
?molecule11 rdfs:label 'substrate' .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf ?molecule19 .
?molecule19 rdfs:label 'substrate' .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf ?molecule33 .
?molecule33 rdfs:label 'substrate' .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf ?molecule41 .
?molecule41 rdfs:label 'substrate' .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf ?molecule49 .
?molecule49 rdfs:label 'substrate' .
_:213763 a rdf:Statement ;
up:attribution _:213749 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:213764 a rdf:Statement ;
up:attribution _:213750 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:213765 a rdf:Statement ;
up:attribution _:213751 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:213766 a rdf:Statement ;
up:attribution _:213752 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:213767 a rdf:Statement ;
up:attribution _:213753 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:213768 a rdf:Statement ;
up:attribution _:213754 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:213769 a rdf:Statement ;
up:attribution _:213755 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008929 .
_:213770 a rdf:Statement ;
up:attribution _:213756 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019242 .
_:213771 a rdf:Statement ;
up:source unirule:MF_00549 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:213772 a rdf:Statement ;
up:attribution _:213757 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:213773 a rdf:Statement ;
up:source unirule:MF_00549 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:213774 a rdf:Statement ;
up:attribution _:213758 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:213775 a rdf:Statement ;
up:source unirule:MF_00549 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:213776 a rdf:Statement ;
up:attribution _:213759 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:213777 a rdf:Statement ;
up:source unirule:MF_00549 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:213778 a rdf:Statement ;
up:attribution _:213760 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:213779 a rdf:Statement ;
up:source unirule:MF_00549 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:213780 a rdf:Statement ;
up:attribution _:213761 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:213781 a rdf:Statement ;
up:source unirule:MF_00549 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:213782 a rdf:Statement ;
up:attribution _:213762 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00549
#Rule MF_00549 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon52 {taxon:2157 taxon:2}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00549 .
?thisOrganism rdfs:subClassOf+ ?supertaxon52 .
BIND(URI(CONCAT(STR(?this), '#MF_00549a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00549a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00549a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00549a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch57 faldo:location ?templateMotifSequenceMatchRegionP0A73158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A73160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A731MF_0054953 .
?templateMotifSequenceMatchRegionP0A73158 faldo:begin ?templateMotifSequenceMatchBeginP0A73159 .
?templateMotifSequenceMatchBeginP0A73159 faldo:position ?templateMotifSequenceMatchBeginPositionP0A73154 ;
faldo:reference isoform:P0A731-1 .
?templateMotifSequenceProfileAlignmentOperationP0A73160 edam:has_input signature:MF_00549 ;
rdf:type edam:operation_0300 .
?targetMotifMatch61 faldo:location ?targetMotifMatchRegionMatch62 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0054964 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A731MF_0054955 .
?targetMotifMatchRegionMatch62 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0054963 .
?targetMotifMatchRegionMatchBeginMF_0054963 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0054956 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0054964 edam:has_input signature:MF_00549 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A731MF_0054953, 1, (STRLEN(?templateMotifCigarP0A731MF_0054953) - STRLEN(REPLACE(?templateMotifCigarP0A731MF_0054953, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP0A73154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A731MF_0054955, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054955) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054955, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A731MF_0054955, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054955) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054955, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0054956) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A731MF_0054953, 1, (STRLEN(?templateMotifCigarP0A731MF_0054953) - STRLEN(REPLACE(?templateMotifCigarP0A731MF_0054953, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP0A73154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A731MF_0054955, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054955) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054955, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A731MF_0054955, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054955) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054955, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0054956) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse9) .
FILTER (REGEX('TG[TAS]T', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00549a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch74 faldo:location ?templateMotifSequenceMatchRegionP0A73175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A73177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A731MF_0054970 .
?templateMotifSequenceMatchRegionP0A73175 faldo:begin ?templateMotifSequenceMatchBeginP0A73176 .
?templateMotifSequenceMatchBeginP0A73176 faldo:position ?templateMotifSequenceMatchBeginPositionP0A73171 ;
faldo:reference isoform:P0A731-1 .
?templateMotifSequenceProfileAlignmentOperationP0A73177 edam:has_input signature:MF_00549 ;
rdf:type edam:operation_0300 .
?targetMotifMatch78 faldo:location ?targetMotifMatchRegionMatch79 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0054981 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A731MF_0054972 .
?targetMotifMatchRegionMatch79 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0054980 .
?targetMotifMatchRegionMatchBeginMF_0054980 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0054973 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0054981 edam:has_input signature:MF_00549 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A731MF_0054970, 1, (STRLEN(?templateMotifCigarP0A731MF_0054970) - STRLEN(REPLACE(?templateMotifCigarP0A731MF_0054970, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP0A73171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A731MF_0054972, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054972) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054972, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A731MF_0054972, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054972) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054972, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0054973) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A731MF_0054970, 1, (STRLEN(?templateMotifCigarP0A731MF_0054970) - STRLEN(REPLACE(?templateMotifCigarP0A731MF_0054970, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP0A73171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A731MF_0054972, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054972) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054972, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A731MF_0054972, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054972) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054972, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0054973) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)) = 'SG')) .
BIND(URI(CONCAT(STR(?this), '#MF_00549a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionP0A73192 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A73194 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A731MF_0054987 .
?templateMotifSequenceMatchRegionP0A73192 faldo:begin ?templateMotifSequenceMatchBeginP0A73193 .
?templateMotifSequenceMatchBeginP0A73193 faldo:position ?templateMotifSequenceMatchBeginPositionP0A73188 ;
faldo:reference isoform:P0A731-1 .
?templateMotifSequenceProfileAlignmentOperationP0A73194 edam:has_input signature:MF_00549 ;
rdf:type edam:operation_0300 .
?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0054998 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A731MF_0054989 .
?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0054997 .
?targetMotifMatchRegionMatchBeginMF_0054997 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0054990 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0054998 edam:has_input signature:MF_00549 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A731MF_0054987, 1, (STRLEN(?templateMotifCigarP0A731MF_0054987) - STRLEN(REPLACE(?templateMotifCigarP0A731MF_0054987, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP0A73188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A731MF_0054989, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054989) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054989, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A731MF_0054989, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_0054989) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_0054989, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0054990) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00549a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionP0A731107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A731109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A731MF_00549102 .
?templateMotifSequenceMatchRegionP0A731107 faldo:begin ?templateMotifSequenceMatchBeginP0A731108 .
?templateMotifSequenceMatchBeginP0A731108 faldo:position ?templateMotifSequenceMatchBeginPositionP0A731103 ;
faldo:reference isoform:P0A731-1 .
?templateMotifSequenceProfileAlignmentOperationP0A731109 edam:has_input signature:MF_00549 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00549113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A731MF_00549104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00549112 .
?targetMotifMatchRegionMatchBeginMF_00549112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00549105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00549113 edam:has_input signature:MF_00549 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A731MF_00549102, 1, (STRLEN(?templateMotifCigarP0A731MF_00549102) - STRLEN(REPLACE(?templateMotifCigarP0A731MF_00549102, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP0A731103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A731MF_00549104, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_00549104) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_00549104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A731MF_00549104, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_00549104) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_00549104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_00549105) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00549a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP0A731122 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A731124 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A731MF_00549117 .
?templateMotifSequenceMatchRegionP0A731122 faldo:begin ?templateMotifSequenceMatchBeginP0A731123 .
?templateMotifSequenceMatchBeginP0A731123 faldo:position ?templateMotifSequenceMatchBeginPositionP0A731118 ;
faldo:reference isoform:P0A731-1 .
?templateMotifSequenceProfileAlignmentOperationP0A731124 edam:has_input signature:MF_00549 ;
rdf:type edam:operation_0300 .
?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00549128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A731MF_00549119 .
?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00549127 .
?targetMotifMatchRegionMatchBeginMF_00549127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00549120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00549128 edam:has_input signature:MF_00549 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A731MF_00549117, 1, (STRLEN(?templateMotifCigarP0A731MF_00549117) - STRLEN(REPLACE(?templateMotifCigarP0A731MF_00549117, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP0A731118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A731MF_00549119, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_00549119) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_00549119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A731MF_00549119, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_00549119) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_00549119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_00549120) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00549a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionP0A731137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A731139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A731MF_00549132 .
?templateMotifSequenceMatchRegionP0A731137 faldo:begin ?templateMotifSequenceMatchBeginP0A731138 .
?templateMotifSequenceMatchBeginP0A731138 faldo:position ?templateMotifSequenceMatchBeginPositionP0A731133 ;
faldo:reference isoform:P0A731-1 .
?templateMotifSequenceProfileAlignmentOperationP0A731139 edam:has_input signature:MF_00549 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00549143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A731MF_00549134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00549142 .
?targetMotifMatchRegionMatchBeginMF_00549142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00549135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00549143 edam:has_input signature:MF_00549 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A731MF_00549132, 1, (STRLEN(?templateMotifCigarP0A731MF_00549132) - STRLEN(REPLACE(?templateMotifCigarP0A731MF_00549132, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionP0A731133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A731MF_00549134, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_00549134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_00549134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A731MF_00549134, 1, (STRLEN(?targetMotifMatchCigarP0A731MF_00549134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A731MF_00549134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00549135) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00549a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
}
"xsd:string |
