| http://purl.uniprot.org/unirules/MF_00551#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:214705 up:source unirule:MF_00551 .
_:214706 up:source unirule:MF_00551 .
_:214707 up:source unirule:MF_00551 .
_:214708 up:source unirule:MF_00551 .
_:214709 up:source unirule:MF_00551 .
_:214710 up:source unirule:MF_00551 .
_:214711 up:source unirule:MF_00551 .
_:214712 up:source unirule:MF_00551 .
_:214713 up:source unirule:MF_00551 .
_:214714 up:source unirule:MF_00551 .
_:214715 up:source unirule:MF_00551 .
_:214716 up:source unirule:MF_00551 .
_:214717 up:source unirule:MF_00551 .
_:214718 up:source unirule:MF_00551 .
_:214719 up:source unirule:MF_00551 .
_:214720 up:source unirule:MF_00551 .
_:214721 up:source unirule:MF_00551 .
_:214722 up:source unirule:MF_00551 .
_:214723 up:source unirule:MF_00551 .
_:214724 up:source unirule:MF_00551 .
_:214725 up:source unirule:MF_00551 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation12 ;
up:classifiedWith GO:0004849 ,
GO:0005524 ,
GO:0005737 ,
GO:0044206 ,
GO:0044211 ,
keyword:418 ,
keyword:547 ,
keyword:67 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.48' ;
up:fullName 'Uridine kinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Cytidine monophosphokinase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Uridine monophosphokinase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'udk' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Pyrimidine metabolism; CTP biosynthesis via salvage pathway; CTP from cytidine: step 1/3.' .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uridine: step 1/1.' .
?annotation10 a up:Subcellular_Location_Annotation .
?annotation10li11 up:cellularComponent .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the uridine kinase family.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:30616 .
_:214726 a rdf:Statement ;
up:attribution _:214705 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:214727 a rdf:Statement ;
up:attribution _:214706 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:214728 a rdf:Statement ;
up:attribution _:214707 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:214729 a rdf:Statement ;
up:attribution _:214708 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:214730 a rdf:Statement ;
up:attribution _:214709 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:214731 a rdf:Statement ;
up:attribution _:214710 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:214732 a rdf:Statement ;
up:attribution _:214711 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:214733 a rdf:Statement ;
up:attribution _:214712 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:214734 a rdf:Statement ;
up:attribution _:214713 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:214735 a rdf:Statement ;
up:attribution _:214714 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:214736 a rdf:Statement ;
up:attribution _:214715 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:214737 a rdf:Statement ;
up:attribution _:214716 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:214738 a rdf:Statement ;
up:attribution _:214717 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:214739 a rdf:Statement ;
up:attribution _:214718 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:214740 a rdf:Statement ;
up:attribution _:214719 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:214741 a rdf:Statement ;
up:attribution _:214720 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:214742 a rdf:Statement ;
up:attribution _:214721 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004849 .
_:214743 a rdf:Statement ;
up:attribution _:214722 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044211 .
_:214744 a rdf:Statement ;
up:attribution _:214723 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044206 .
_:214745 a rdf:Statement ;
up:attribution _:214724 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:214746 a rdf:Statement ;
up:source unirule:MF_00551 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:214747 a rdf:Statement ;
up:attribution _:214725 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00551
#Rule MF_00551 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon20 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00551 .
?thisOrganism rdfs:subClassOf+ ?supertaxon20 .
BIND(URI(CONCAT(STR(?this), '#MF_00551a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00551a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00551a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00551a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00551a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00551a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00551a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00551a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_00551a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch25 faldo:location ?templateMotifSequenceMatchRegionP0A8F426 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8F428 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8F4MF_0055121 .
?templateMotifSequenceMatchRegionP0A8F426 faldo:begin ?templateMotifSequenceMatchBeginP0A8F427 .
?templateMotifSequenceMatchBeginP0A8F427 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8F422 ;
faldo:reference isoform:P0A8F4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8F428 edam:has_input signature:MF_00551 ;
rdf:type edam:operation_0300 .
?targetMotifMatch29 faldo:location ?targetMotifMatchRegionMatch30 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0055132 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8F4MF_0055123 .
?targetMotifMatchRegionMatch30 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0055131 .
?targetMotifMatchRegionMatchBeginMF_0055131 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055124 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0055132 edam:has_input signature:MF_00551 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8F4MF_0055121, 1, (STRLEN(?templateMotifCigarP0A8F4MF_0055121) - STRLEN(REPLACE(?templateMotifCigarP0A8F4MF_0055121, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionP0A8F422) + 1)), '}'), '')))), '[a-z]', '')) AS ?step133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8F4MF_0055123, 1, (STRLEN(?targetMotifMatchCigarP0A8F4MF_0055123) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8F4MF_0055123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8F4MF_0055123, 1, (STRLEN(?targetMotifMatchCigarP0A8F4MF_0055123) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8F4MF_0055123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), '')))), '[^-]', ''))) AS ?step234) .
BIND(((?step234 + ?targetMotifMatchRegionMatchBeginPositionMF_0055124) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8F4MF_0055121, 1, (STRLEN(?templateMotifCigarP0A8F4MF_0055121) - STRLEN(REPLACE(?templateMotifCigarP0A8F4MF_0055121, CONCAT('^(?:-*[^-]){', STR(((22 - ?templateMotifSequenceMatchBeginPositionP0A8F422) + 1)), '}'), '')))), '[a-z]', '')) AS ?step135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8F4MF_0055123, 1, (STRLEN(?targetMotifMatchCigarP0A8F4MF_0055123) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8F4MF_0055123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8F4MF_0055123, 1, (STRLEN(?targetMotifMatchCigarP0A8F4MF_0055123) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8F4MF_0055123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), '')))), '[^-]', ''))) AS ?step236) .
BIND(((?step236 + ?targetMotifMatchRegionMatchBeginPositionMF_0055124) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER (REGEX('G[GA][ST][GAC][GSA]GK[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00551a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
}
"xsd:string |
