| http://purl.uniprot.org/unirules/MF_00615#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:237776 up:source unirule:MF_00615 .
_:237777 up:source unirule:MF_00615 .
_:237778 up:source unirule:MF_00615 .
_:237779 up:source unirule:MF_00615 .
_:237780 up:source unirule:MF_00615 .
_:237781 up:source unirule:MF_00615 .
_:237782 up:source unirule:MF_00615 .
_:237783 up:source unirule:MF_00615 .
_:237784 up:source unirule:MF_00615 .
_:237785 up:source unirule:MF_00615 .
_:237786 up:source unirule:MF_00615 .
_:237787 up:source unirule:MF_00615 .
_:237788 up:source unirule:MF_00615 .
_:237789 up:source unirule:MF_00615 .
_:237790 up:source unirule:MF_00615 .
_:237791 up:source unirule:MF_00615 .
_:237792 up:source unirule:MF_00615 .
_:237793 up:source unirule:MF_00615 .
_:237794 up:source unirule:MF_00615 .
_:237795 up:source unirule:MF_00615 .
_:237796 up:source unirule:MF_00615 .
_:237797 up:source unirule:MF_00615 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0003899 ,
GO:0005737 ,
GO:0006351 ,
keyword:240 ,
keyword:548 ,
keyword:804 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.6' ;
up:fullName 'DNA-directed RNA polymerase subunit Rpo12' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'DNA-directed RNA polymerase subunit P' ;
rdf:type up:Structured_Name .
?gene2 skos:altLabel 'rpoP' ;
skos:prefLabel 'rpo12' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Part of the RNA polymerase complex.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the archaeal Rpo12/eukaryotic RPC10 RNA polymerase subunit family.' .
?case10 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:29105 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29105 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29105 .
_:237798 a rdf:Statement ;
up:attribution _:237776 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:237799 a rdf:Statement ;
up:attribution _:237777 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:237800 a rdf:Statement ;
up:attribution _:237778 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:237801 a rdf:Statement ;
up:attribution _:237779 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:237802 a rdf:Statement ;
up:attribution _:237780 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:237803 a rdf:Statement ;
up:attribution _:237781 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:237804 a rdf:Statement ;
up:attribution _:237782 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:237805 a rdf:Statement ;
up:attribution _:237783 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:237806 a rdf:Statement ;
up:attribution _:237784 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:237807 a rdf:Statement ;
up:attribution _:237785 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:237808 a rdf:Statement ;
up:attribution _:237786 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:237809 a rdf:Statement ;
up:attribution _:237787 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:240 .
_:237810 a rdf:Statement ;
up:attribution _:237788 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:237811 a rdf:Statement ;
up:attribution _:237789 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:237812 a rdf:Statement ;
up:attribution _:237790 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003899 .
_:237813 a rdf:Statement ;
up:attribution _:237791 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006351 .
_:237814 a rdf:Statement ;
up:attribution _:237792 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:237815 a rdf:Statement ;
up:attribution _:237793 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:237816 a rdf:Statement ;
up:attribution _:237794 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:237817 a rdf:Statement ;
up:source unirule:MF_00615 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:237818 a rdf:Statement ;
up:attribution _:237795 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:237819 a rdf:Statement ;
up:source unirule:MF_00615 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:237820 a rdf:Statement ;
up:attribution _:237796 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:237821 a rdf:Statement ;
up:source unirule:MF_00615 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:237822 a rdf:Statement ;
up:attribution _:237797 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00615
#Rule MF_00615 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-03-21
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00615 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00615a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00615a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00615a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00615a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00615a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00615a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00615a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch34 faldo:location ?templateMotifSequenceMatchRegionQ97ZX735 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97ZX737 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97ZX7MF_0061530 .
?templateMotifSequenceMatchRegionQ97ZX735 faldo:begin ?templateMotifSequenceMatchBeginQ97ZX736 .
?templateMotifSequenceMatchBeginQ97ZX736 faldo:position ?templateMotifSequenceMatchBeginPositionQ97ZX731 ;
faldo:reference isoform:Q97ZX7-1 .
?templateMotifSequenceProfileAlignmentOperationQ97ZX737 edam:has_input signature:MF_00615 ;
rdf:type edam:operation_0300 .
?targetMotifMatch38 faldo:location ?targetMotifMatchRegionMatch39 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0061541 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97ZX7MF_0061532 .
?targetMotifMatchRegionMatch39 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0061540 .
?targetMotifMatchRegionMatchBeginMF_0061540 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0061533 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0061541 edam:has_input signature:MF_00615 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZX7MF_0061530, 1, (STRLEN(?templateMotifCigarQ97ZX7MF_0061530) - STRLEN(REPLACE(?templateMotifCigarQ97ZX7MF_0061530, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionQ97ZX731) + 1)), '}'), '')))), '[a-z]', '')) AS ?step142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZX7MF_0061532, 1, (STRLEN(?targetMotifMatchCigarQ97ZX7MF_0061532) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZX7MF_0061532, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZX7MF_0061532, 1, (STRLEN(?targetMotifMatchCigarQ97ZX7MF_0061532) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZX7MF_0061532, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), '')))), '[^-]', ''))) AS ?step243) .
BIND(((?step243 + ?targetMotifMatchRegionMatchBeginPositionMF_0061533) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZX7MF_0061530, 1, (STRLEN(?templateMotifCigarQ97ZX7MF_0061530) - STRLEN(REPLACE(?templateMotifCigarQ97ZX7MF_0061530, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionQ97ZX731) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZX7MF_0061532, 1, (STRLEN(?targetMotifMatchCigarQ97ZX7MF_0061532) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZX7MF_0061532, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZX7MF_0061532, 1, (STRLEN(?targetMotifMatchCigarQ97ZX7MF_0061532) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZX7MF_0061532, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0061533) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZX7MF_0061530, 1, (STRLEN(?templateMotifCigarQ97ZX7MF_0061530) - STRLEN(REPLACE(?templateMotifCigarQ97ZX7MF_0061530, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionQ97ZX731) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZX7MF_0061532, 1, (STRLEN(?targetMotifMatchCigarQ97ZX7MF_0061532) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZX7MF_0061532, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZX7MF_0061532, 1, (STRLEN(?targetMotifMatchCigarQ97ZX7MF_0061532) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZX7MF_0061532, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0061533) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'C')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag51) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag51, ?UNBOUND_VARIABLE) AS ?case10) .
}
"xsd:string |
