| http://purl.uniprot.org/unirules/MF_00617#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:238399 up:source unirule:MF_00617 .
_:238400 up:source unirule:MF_00617 .
_:238401 up:source unirule:MF_00617 .
_:238402 up:source unirule:MF_00617 .
_:238403 up:source unirule:MF_00617 .
_:238404 up:source unirule:MF_00617 .
_:238405 up:source unirule:MF_00617 .
_:238406 up:source unirule:MF_00617 .
_:238407 up:source unirule:MF_00617 .
_:238408 up:source unirule:MF_00617 .
_:238409 up:source unirule:MF_00617 .
_:238410 up:source unirule:MF_00617 .
_:238411 up:source unirule:MF_00617 .
_:238412 up:source unirule:MF_00617 .
_:238413 up:source unirule:MF_00617 .
_:238414 up:source unirule:MF_00617 .
_:238415 up:source unirule:MF_00617 .
?this up:annotation ?annotation1 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0005737 ,
GO:0050531 ,
keyword:378 ,
keyword:460 ,
keyword:479 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.3.70' ;
up:fullName 'Mannosyl-3-phosphoglycerate phosphatase' ;
up:shortName 'MPGP' ;
rdf:type up:Structured_Name .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the HAD-like hydrolase superfamily. MPGP family.' .
?case7 up:classifiedWith GO:0051479 .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:18420 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:18420 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:18420 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:18420 .
_:238416 a rdf:Statement ;
up:attribution _:238399 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:238417 a rdf:Statement ;
up:attribution _:238400 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:238418 a rdf:Statement ;
up:attribution _:238401 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:238419 a rdf:Statement ;
up:attribution _:238402 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:238420 a rdf:Statement ;
up:attribution _:238403 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:238421 a rdf:Statement ;
up:attribution _:238404 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:238422 a rdf:Statement ;
up:attribution _:238405 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:238423 a rdf:Statement ;
up:attribution _:238406 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:238424 a rdf:Statement ;
up:attribution _:238407 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:238425 a rdf:Statement ;
up:attribution _:238408 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050531 .
_:238426 a rdf:Statement ;
up:attribution _:238409 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:238427 a rdf:Statement ;
up:attribution _:238410 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051479 .
_:238428 a rdf:Statement ;
up:source unirule:MF_00617 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:238429 a rdf:Statement ;
up:attribution _:238411 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:238430 a rdf:Statement ;
up:source unirule:MF_00617 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:238431 a rdf:Statement ;
up:attribution _:238412 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:238432 a rdf:Statement ;
up:source unirule:MF_00617 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:238433 a rdf:Statement ;
up:attribution _:238413 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:238434 a rdf:Statement ;
up:source unirule:MF_00617 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:238435 a rdf:Statement ;
up:attribution _:238414 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:238436 a rdf:Statement ;
up:source unirule:MF_00617 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:238437 a rdf:Statement ;
up:attribution _:238415 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00617
#Rule MF_00617 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-05-14
VALUES ?supertaxon42 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00617 .
?thisOrganism rdfs:subClassOf+ ?supertaxon42 .
BIND(URI(CONCAT(STR(?this), '#MF_00617a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00617a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00617a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00617a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00617a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch47 faldo:location ?templateMotifSequenceMatchRegionO5869048 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5869050 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58690MF_0061743 .
?templateMotifSequenceMatchRegionO5869048 faldo:begin ?templateMotifSequenceMatchBeginO5869049 .
?templateMotifSequenceMatchBeginO5869049 faldo:position ?templateMotifSequenceMatchBeginPositionO5869044 ;
faldo:reference isoform:O58690-1 .
?templateMotifSequenceProfileAlignmentOperationO5869050 edam:has_input signature:MF_00617 ;
rdf:type edam:operation_0300 .
?targetMotifMatch51 faldo:location ?targetMotifMatchRegionMatch52 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0061754 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58690MF_0061745 .
?targetMotifMatchRegionMatch52 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0061753 .
?targetMotifMatchRegionMatchBeginMF_0061753 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0061746 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0061754 edam:has_input signature:MF_00617 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58690MF_0061743, 1, (STRLEN(?templateMotifCigarO58690MF_0061743) - STRLEN(REPLACE(?templateMotifCigarO58690MF_0061743, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionO5869044) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58690MF_0061745, 1, (STRLEN(?targetMotifMatchCigarO58690MF_0061745) - STRLEN(REPLACE(?targetMotifMatchCigarO58690MF_0061745, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58690MF_0061745, 1, (STRLEN(?targetMotifMatchCigarO58690MF_0061745) - STRLEN(REPLACE(?targetMotifMatchCigarO58690MF_0061745, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0061746) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00617a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionO5869063 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5869065 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58690MF_0061758 .
?templateMotifSequenceMatchRegionO5869063 faldo:begin ?templateMotifSequenceMatchBeginO5869064 .
?templateMotifSequenceMatchBeginO5869064 faldo:position ?templateMotifSequenceMatchBeginPositionO5869059 ;
faldo:reference isoform:O58690-1 .
?templateMotifSequenceProfileAlignmentOperationO5869065 edam:has_input signature:MF_00617 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0061769 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58690MF_0061760 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0061768 .
?targetMotifMatchRegionMatchBeginMF_0061768 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0061761 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0061769 edam:has_input signature:MF_00617 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58690MF_0061758, 1, (STRLEN(?templateMotifCigarO58690MF_0061758) - STRLEN(REPLACE(?templateMotifCigarO58690MF_0061758, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionO5869059) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58690MF_0061760, 1, (STRLEN(?targetMotifMatchCigarO58690MF_0061760) - STRLEN(REPLACE(?targetMotifMatchCigarO58690MF_0061760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58690MF_0061760, 1, (STRLEN(?targetMotifMatchCigarO58690MF_0061760) - STRLEN(REPLACE(?targetMotifMatchCigarO58690MF_0061760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0061761) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00617a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionO5869078 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5869080 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58690MF_0061773 .
?templateMotifSequenceMatchRegionO5869078 faldo:begin ?templateMotifSequenceMatchBeginO5869079 .
?templateMotifSequenceMatchBeginO5869079 faldo:position ?templateMotifSequenceMatchBeginPositionO5869074 ;
faldo:reference isoform:O58690-1 .
?templateMotifSequenceProfileAlignmentOperationO5869080 edam:has_input signature:MF_00617 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0061784 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58690MF_0061775 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0061783 .
?targetMotifMatchRegionMatchBeginMF_0061783 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0061776 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0061784 edam:has_input signature:MF_00617 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58690MF_0061773, 1, (STRLEN(?templateMotifCigarO58690MF_0061773) - STRLEN(REPLACE(?templateMotifCigarO58690MF_0061773, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionO5869074) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58690MF_0061775, 1, (STRLEN(?targetMotifMatchCigarO58690MF_0061775) - STRLEN(REPLACE(?targetMotifMatchCigarO58690MF_0061775, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58690MF_0061775, 1, (STRLEN(?targetMotifMatchCigarO58690MF_0061775) - STRLEN(REPLACE(?targetMotifMatchCigarO58690MF_0061775, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0061776) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00617a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionO5869093 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5869095 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58690MF_0061788 .
?templateMotifSequenceMatchRegionO5869093 faldo:begin ?templateMotifSequenceMatchBeginO5869094 .
?templateMotifSequenceMatchBeginO5869094 faldo:position ?templateMotifSequenceMatchBeginPositionO5869089 ;
faldo:reference isoform:O58690-1 .
?templateMotifSequenceProfileAlignmentOperationO5869095 edam:has_input signature:MF_00617 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0061799 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58690MF_0061790 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0061798 .
?targetMotifMatchRegionMatchBeginMF_0061798 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0061791 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0061799 edam:has_input signature:MF_00617 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58690MF_0061788, 1, (STRLEN(?templateMotifCigarO58690MF_0061788) - STRLEN(REPLACE(?templateMotifCigarO58690MF_0061788, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionO5869089) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58690MF_0061790, 1, (STRLEN(?targetMotifMatchCigarO58690MF_0061790) - STRLEN(REPLACE(?targetMotifMatchCigarO58690MF_0061790, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58690MF_0061790, 1, (STRLEN(?targetMotifMatchCigarO58690MF_0061790) - STRLEN(REPLACE(?targetMotifMatchCigarO58690MF_0061790, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0061791) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00617a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionO58690108 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58690110 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58690MF_00617103 .
?templateMotifSequenceMatchRegionO58690108 faldo:begin ?templateMotifSequenceMatchBeginO58690109 .
?templateMotifSequenceMatchBeginO58690109 faldo:position ?templateMotifSequenceMatchBeginPositionO58690104 ;
faldo:reference isoform:O58690-1 .
?templateMotifSequenceProfileAlignmentOperationO58690110 edam:has_input signature:MF_00617 ;
rdf:type edam:operation_0300 .
?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00617114 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58690MF_00617105 .
?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00617113 .
?targetMotifMatchRegionMatchBeginMF_00617113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00617106 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00617114 edam:has_input signature:MF_00617 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58690MF_00617103, 1, (STRLEN(?templateMotifCigarO58690MF_00617103) - STRLEN(REPLACE(?templateMotifCigarO58690MF_00617103, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionO58690104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58690MF_00617105, 1, (STRLEN(?targetMotifMatchCigarO58690MF_00617105) - STRLEN(REPLACE(?targetMotifMatchCigarO58690MF_00617105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58690MF_00617105, 1, (STRLEN(?targetMotifMatchCigarO58690MF_00617105) - STRLEN(REPLACE(?targetMotifMatchCigarO58690MF_00617105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_00617106) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00617a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case7) .
}
}
"xsd:string |
