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http://purl.uniprot.org/unirules/MF_00642#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00642#construct-template-83
http://purl.uniprot.org/unirules/MF_00642#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00642#construct-template-15
http://purl.uniprot.org/unirules/MF_00642#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00642#construct-template-39
http://purl.uniprot.org/unirules/MF_00642#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00642#construct-template-13
http://purl.uniprot.org/unirules/MF_00642#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00642#construct-template-43
http://purl.uniprot.org/unirules/MF_00642#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00642#construct-template-37
http://purl.uniprot.org/unirules/MF_00642#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00642#construct-template-67
http://purl.uniprot.org/unirules/MF_00642#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00642#construct-template-17
http://purl.uniprot.org/unirules/MF_00642#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00642#construct-template-28
http://purl.uniprot.org/unirules/MF_00642#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00642#construct-template-111
http://purl.uniprot.org/unirules/MF_00642#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00642#construct-template-89
http://purl.uniprot.org/unirules/MF_00642#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00642#construct-template-40
http://purl.uniprot.org/unirules/MF_00642#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00642#construct-template-113
http://purl.uniprot.org/unirules/MF_00642#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00642#construct-template-62
http://purl.uniprot.org/unirules/MF_00642#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00642#construct-template-87
http://purl.uniprot.org/unirules/MF_00642#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00642#construct-template-86
http://purl.uniprot.org/unirules/MF_00642#constructhttp://www.w3.org/ns/shacl#prefixeshttp://purl.uniprot.org/unirules/
http://purl.uniprot.org/unirules/MF_00642#constructhttp://spinrdf.org/sp#wherehttp://purl.uniprot.org/unirules/MF_00642#construct-where-list-0
http://purl.uniprot.org/unirules/MF_00642#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_00642#construct-template-list-0
http://purl.uniprot.org/unirules/MF_00642#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:246080 up:source unirule:MF_00642 . _:246081 up:source unirule:MF_00642 . _:246082 up:source unirule:MF_00642 . _:246083 up:source unirule:MF_00642 . _:246084 up:source unirule:MF_00642 . _:246085 up:source unirule:MF_00642 . _:246086 up:source unirule:MF_00642 . _:246087 up:source unirule:MF_00642 . _:246088 up:source unirule:MF_00642 . _:246089 up:source unirule:MF_00642 . _:246090 up:source unirule:MF_00642 . _:246091 up:source unirule:MF_00642 . _:246092 up:source unirule:MF_00642 . _:246093 up:source unirule:MF_00642 . _:246094 up:source unirule:MF_00642 . _:246095 up:source unirule:MF_00642 . _:246096 up:source unirule:MF_00642 . _:246097 up:source unirule:MF_00642 . _:246098 up:source unirule:MF_00642 . _:246099 up:source unirule:MF_00642 . _:246100 up:source unirule:MF_00642 . _:246101 up:source unirule:MF_00642 . _:246102 up:source unirule:MF_00642 . _:246103 up:source unirule:MF_00642 . _:246104 up:source unirule:MF_00642 . _:246105 up:source unirule:MF_00642 . _:246106 up:source unirule:MF_00642 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation5 ; up:classifiedWith GO:0005506 , GO:0009055 , GO:0015979 , keyword:1133 , keyword:249 , keyword:349 , keyword:408 , keyword:472 , keyword:479 , keyword:602 , keyword:604 , keyword:812 , keyword:813 ; up:recommendedName ?name0 . ?name0 up:fullName 'Cytochrome b559 subunit alpha' ; rdf:type up:Structured_Name . ?name1 up:fullName 'PSII reaction center subunit V' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'psbE' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.' . ?annotation4 up:cofactor chebi:60344 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'With its partner (PsbF) binds heme. PSII binds additional chlorophylls, carotenoids and specific lipids.' . ?annotation5 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the PsbE/PsbF family.' . ?case6 up:classifiedWith GO:0009535 . ?case7 up:classifiedWith keyword:1003 , keyword:997 . ?case9 up:classifiedWith keyword:793 . ?case11 up:classifiedWith GO:0005886 . ?case12 up:classifiedWith GO:0042651 . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfs19 up:annotation ?annotation20 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; up:ligand ?ligand23 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'axial binding residue' . ?pfsb21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?ligand23 up:ligandPart ?ligand23 ; rdfs:subClassOf chebi:18248 , chebi:30413 . _:246107 a rdf:Statement ; up:attribution _:246080 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:246108 a rdf:Statement ; up:attribution _:246081 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:246109 a rdf:Statement ; up:attribution _:246082 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:246110 a rdf:Statement ; up:attribution _:246083 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:246111 a rdf:Statement ; up:attribution _:246084 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:246112 a rdf:Statement ; up:attribution _:246085 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:246113 a rdf:Statement ; up:attribution _:246086 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:602 . _:246114 a rdf:Statement ; up:attribution _:246087 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:604 . _:246115 a rdf:Statement ; up:attribution _:246088 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:349 . _:246116 a rdf:Statement ; up:attribution _:246089 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:246117 a rdf:Statement ; up:attribution _:246090 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:246118 a rdf:Statement ; up:attribution _:246091 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:813 . _:246119 a rdf:Statement ; up:attribution _:246092 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:249 . _:246120 a rdf:Statement ; up:attribution _:246093 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:246121 a rdf:Statement ; up:attribution _:246094 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:246122 a rdf:Statement ; up:attribution _:246095 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:246123 a rdf:Statement ; up:attribution _:246096 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009055 . _:246124 a rdf:Statement ; up:attribution _:246097 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005506 . _:246125 a rdf:Statement ; up:attribution _:246098 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0015979 . _:246126 a rdf:Statement ; up:attribution _:246099 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009535 . _:246127 a rdf:Statement ; up:attribution _:246100 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1003 . _:246128 a rdf:Statement ; up:attribution _:246101 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:997 . _:246129 a rdf:Statement ; up:attribution _:246102 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object keyword:793 . _:246130 a rdf:Statement ; up:attribution _:246103 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005886 . _:246131 a rdf:Statement ; up:attribution _:246104 ; rdf:subject ?case12 ; rdf:predicate up:classifiedWith ; rdf:object GO:0042651 . _:246132 a rdf:Statement ; up:source unirule:MF_00642 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:246133 a rdf:Statement ; up:attribution _:246105 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:246134 a rdf:Statement ; up:source unirule:MF_00642 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:246135 a rdf:Statement ; up:attribution _:246106 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00642 #Rule MF_00642 Created by:? on:2005-02-28 Modified by:Andrea Auchincloss on:2023-06-20 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00642 . ?thisOrganism rdfs:subClassOf+ taxon:1117 . } UNION { ?this rdfs:seeAlso signature:MF_00642 . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } UNION { ?this up:encodedIn up:Cyanelle . } UNION { ?this up:encodedIn up:Apicoplast . } UNION { ?this up:encodedIn up:Organellar_chromatophore . } UNION { ?this up:encodedIn up:Non-photosynthetic_plastid . } } BIND(URI(CONCAT(STR(?this), '#MF_00642a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00642a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00642a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00642a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00642a5')) AS ?annotation5) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch30 faldo:location ?templateMotifSequenceMatchRegionP1223831 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1223833 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP12238MF_0064226 . ?templateMotifSequenceMatchRegionP1223831 faldo:begin ?templateMotifSequenceMatchBeginP1223832 . ?templateMotifSequenceMatchBeginP1223832 faldo:position ?templateMotifSequenceMatchBeginPositionP1223827 ; faldo:reference isoform:P12238-1 . ?templateMotifSequenceProfileAlignmentOperationP1223833 edam:has_input signature:MF_00642 ; rdf:type edam:operation_0300 . ?targetMotifMatch34 faldo:location ?targetMotifMatchRegionMatch35 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0064237 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP12238MF_0064228 . ?targetMotifMatchRegionMatch35 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0064236 . ?targetMotifMatchRegionMatchBeginMF_0064236 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0064229 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0064237 edam:has_input signature:MF_00642 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12238MF_0064226, 1, (STRLEN(?templateMotifCigarP12238MF_0064226) - STRLEN(REPLACE(?templateMotifCigarP12238MF_0064226, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP1223827) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12238MF_0064228, 1, (STRLEN(?targetMotifMatchCigarP12238MF_0064228) - STRLEN(REPLACE(?targetMotifMatchCigarP12238MF_0064228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12238MF_0064228, 1, (STRLEN(?targetMotifMatchCigarP12238MF_0064228) - STRLEN(REPLACE(?targetMotifMatchCigarP12238MF_0064228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) . BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0064229) - 1) AS ?thisPositionOn17) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12238MF_0064226, 1, (STRLEN(?templateMotifCigarP12238MF_0064226) - STRLEN(REPLACE(?templateMotifCigarP12238MF_0064226, CONCAT('^(?:-*[^-]){', STR(((35 - ?templateMotifSequenceMatchBeginPositionP1223827) + 1)), '}'), '')))), '[a-z]', '')) AS ?step140) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12238MF_0064228, 1, (STRLEN(?targetMotifMatchCigarP12238MF_0064228) - STRLEN(REPLACE(?targetMotifMatchCigarP12238MF_0064228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12238MF_0064228, 1, (STRLEN(?targetMotifMatchCigarP12238MF_0064228) - STRLEN(REPLACE(?targetMotifMatchCigarP12238MF_0064228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step140), '}'), '')))), '[^-]', ''))) AS ?step241) . BIND(((?step241 + ?targetMotifMatchRegionMatchBeginPositionMF_0064229) - 1) AS ?thisPositionOn18) . BIND(?this AS ?pfs1t42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) . FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) . BIND(URI(CONCAT(STR(?this), '#MF_00642a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch47 faldo:location ?templateMotifSequenceMatchRegionP1223848 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1223850 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP12238MF_0064243 . ?templateMotifSequenceMatchRegionP1223848 faldo:begin ?templateMotifSequenceMatchBeginP1223849 . ?templateMotifSequenceMatchBeginP1223849 faldo:position ?templateMotifSequenceMatchBeginPositionP1223844 ; faldo:reference isoform:P12238-1 . ?templateMotifSequenceProfileAlignmentOperationP1223850 edam:has_input signature:MF_00642 ; rdf:type edam:operation_0300 . ?targetMotifMatch51 faldo:location ?targetMotifMatchRegionMatch52 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0064254 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP12238MF_0064245 . ?targetMotifMatchRegionMatch52 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0064253 . ?targetMotifMatchRegionMatchBeginMF_0064253 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0064246 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0064254 edam:has_input signature:MF_00642 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12238MF_0064243, 1, (STRLEN(?templateMotifCigarP12238MF_0064243) - STRLEN(REPLACE(?templateMotifCigarP12238MF_0064243, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP1223844) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12238MF_0064245, 1, (STRLEN(?targetMotifMatchCigarP12238MF_0064245) - STRLEN(REPLACE(?targetMotifMatchCigarP12238MF_0064245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12238MF_0064245, 1, (STRLEN(?targetMotifMatchCigarP12238MF_0064245) - STRLEN(REPLACE(?targetMotifMatchCigarP12238MF_0064245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) . BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0064246) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00642a20')) AS ?annotation20) . BIND(?this AS ?pfs19) . } OPTIONAL { ?this a up:Protein . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } BIND(?this AS ?case6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33071 . BIND(?this AS ?case7) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1117 . BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33071 . })) . BIND(?this AS ?case9) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1117 . })) . BIND(?this AS ?case10) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33071 . FILTER (! (EXISTS { { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } })) . BIND(?this AS ?case11) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33071 . })) . BIND(?this AS ?case12) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_00642http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_00642#construct
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