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http://purl.uniprot.org/unirules/MF_00643#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00643#construct-template-98
http://purl.uniprot.org/unirules/MF_00643#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00643#construct-template-79
http://purl.uniprot.org/unirules/MF_00643#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00643#construct-template-77
http://purl.uniprot.org/unirules/MF_00643#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00643#construct-template-78
http://purl.uniprot.org/unirules/MF_00643#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00643#construct-template-110
http://purl.uniprot.org/unirules/MF_00643#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00643#construct-template-111
http://purl.uniprot.org/unirules/MF_00643#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00643#construct-template-112
http://purl.uniprot.org/unirules/MF_00643#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00643#construct-template-113
http://purl.uniprot.org/unirules/MF_00643#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00643#construct-template-91
http://purl.uniprot.org/unirules/MF_00643#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00643#construct-template-92
http://purl.uniprot.org/unirules/MF_00643#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00643#construct-template-90
http://purl.uniprot.org/unirules/MF_00643#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00643#construct-template-95
http://purl.uniprot.org/unirules/MF_00643#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00643#construct-template-72
http://purl.uniprot.org/unirules/MF_00643#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00643#construct-template-96
http://purl.uniprot.org/unirules/MF_00643#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00643#construct-template-93
http://purl.uniprot.org/unirules/MF_00643#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00643#construct-template-94
http://purl.uniprot.org/unirules/MF_00643#constructhttp://www.w3.org/ns/shacl#prefixeshttp://purl.uniprot.org/unirules/
http://purl.uniprot.org/unirules/MF_00643#constructhttp://spinrdf.org/sp#wherehttp://purl.uniprot.org/unirules/MF_00643#construct-where-list-0
http://purl.uniprot.org/unirules/MF_00643#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_00643#construct-template-list-0
http://purl.uniprot.org/unirules/MF_00643#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:246612 up:source unirule:MF_00643 . _:246613 up:source unirule:MF_00643 . _:246614 up:source unirule:MF_00643 . _:246615 up:source unirule:MF_00643 . _:246616 up:source unirule:MF_00643 . _:246617 up:source unirule:MF_00643 . _:246618 up:source unirule:MF_00643 . _:246619 up:source unirule:MF_00643 . _:246620 up:source unirule:MF_00643 . _:246621 up:source unirule:MF_00643 . _:246622 up:source unirule:MF_00643 . _:246623 up:source unirule:MF_00643 . _:246624 up:source unirule:MF_00643 . _:246625 up:source unirule:MF_00643 . _:246626 up:source unirule:MF_00643 . _:246627 up:source unirule:MF_00643 . _:246628 up:source unirule:MF_00643 . _:246629 up:source unirule:MF_00643 . _:246630 up:source unirule:MF_00643 . _:246631 up:source unirule:MF_00643 . _:246632 up:source unirule:MF_00643 . _:246633 up:source unirule:MF_00643 . _:246634 up:source unirule:MF_00643 . _:246635 up:source unirule:MF_00643 . _:246636 up:source unirule:MF_00643 . _:246637 up:source unirule:MF_00643 . _:246638 up:source unirule:MF_00643 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation5 ; up:classifiedWith GO:0005506 , GO:0009055 , GO:0015979 , keyword:1133 , keyword:249 , keyword:349 , keyword:408 , keyword:472 , keyword:479 , keyword:602 , keyword:604 , keyword:812 , keyword:813 ; up:recommendedName ?name0 . ?name0 up:fullName 'Cytochrome b559 subunit beta' ; rdf:type up:Structured_Name . ?name1 up:fullName 'PSII reaction center subunit VI' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'psbF' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.' . ?annotation4 up:cofactor chebi:60344 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'With its partner (PsbE) binds heme. PSII binds additional chlorophylls, carotenoids and specific lipids.' . ?annotation5 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the PsbE/PsbF family.' . ?case6 up:classifiedWith GO:0009535 . ?case7 up:classifiedWith keyword:1003 , keyword:997 . ?case9 up:classifiedWith keyword:793 . ?case11 up:classifiedWith GO:0005886 . ?case12 up:classifiedWith GO:0042651 . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfs19 up:annotation ?annotation20 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; up:ligand ?ligand23 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'axial binding residue' . ?pfsb21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?ligand23 up:ligandPart ?ligand23 ; rdfs:subClassOf chebi:18248 , chebi:30413 . _:246639 a rdf:Statement ; up:attribution _:246612 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:246640 a rdf:Statement ; up:attribution _:246613 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:246641 a rdf:Statement ; up:attribution _:246614 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:246642 a rdf:Statement ; up:attribution _:246615 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:246643 a rdf:Statement ; up:attribution _:246616 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:246644 a rdf:Statement ; up:attribution _:246617 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:246645 a rdf:Statement ; up:attribution _:246618 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:602 . _:246646 a rdf:Statement ; up:attribution _:246619 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:604 . _:246647 a rdf:Statement ; up:attribution _:246620 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:349 . _:246648 a rdf:Statement ; up:attribution _:246621 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:246649 a rdf:Statement ; up:attribution _:246622 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:246650 a rdf:Statement ; up:attribution _:246623 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:813 . _:246651 a rdf:Statement ; up:attribution _:246624 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:249 . _:246652 a rdf:Statement ; up:attribution _:246625 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:246653 a rdf:Statement ; up:attribution _:246626 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:246654 a rdf:Statement ; up:attribution _:246627 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:246655 a rdf:Statement ; up:attribution _:246628 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009055 . _:246656 a rdf:Statement ; up:attribution _:246629 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005506 . _:246657 a rdf:Statement ; up:attribution _:246630 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0015979 . _:246658 a rdf:Statement ; up:attribution _:246631 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009535 . _:246659 a rdf:Statement ; up:attribution _:246632 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1003 . _:246660 a rdf:Statement ; up:attribution _:246633 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:997 . _:246661 a rdf:Statement ; up:attribution _:246634 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object keyword:793 . _:246662 a rdf:Statement ; up:attribution _:246635 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005886 . _:246663 a rdf:Statement ; up:attribution _:246636 ; rdf:subject ?case12 ; rdf:predicate up:classifiedWith ; rdf:object GO:0042651 . _:246664 a rdf:Statement ; up:source unirule:MF_00643 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:246665 a rdf:Statement ; up:attribution _:246637 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:246666 a rdf:Statement ; up:source unirule:MF_00643 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:246667 a rdf:Statement ; up:attribution _:246638 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00643 #Rule MF_00643 Created by:? on:2005-02-28 Modified by:Andrea Auchincloss on:2023-06-20 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00643 . ?thisOrganism rdfs:subClassOf+ taxon:1117 . } UNION { ?this rdfs:seeAlso signature:MF_00643 . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } UNION { ?this up:encodedIn up:Cyanelle . } UNION { ?this up:encodedIn up:Apicoplast . } UNION { ?this up:encodedIn up:Organellar_chromatophore . } UNION { ?this up:encodedIn up:Non-photosynthetic_plastid . } } BIND(URI(CONCAT(STR(?this), '#MF_00643a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00643a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00643a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00643a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00643a5')) AS ?annotation5) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch30 faldo:location ?templateMotifSequenceMatchRegionP1223931 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1223933 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP12239MF_0064326 . ?templateMotifSequenceMatchRegionP1223931 faldo:begin ?templateMotifSequenceMatchBeginP1223932 . ?templateMotifSequenceMatchBeginP1223932 faldo:position ?templateMotifSequenceMatchBeginPositionP1223927 ; faldo:reference isoform:P12239-1 . ?templateMotifSequenceProfileAlignmentOperationP1223933 edam:has_input signature:MF_00643 ; rdf:type edam:operation_0300 . ?targetMotifMatch34 faldo:location ?targetMotifMatchRegionMatch35 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0064337 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP12239MF_0064328 . ?targetMotifMatchRegionMatch35 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0064336 . ?targetMotifMatchRegionMatchBeginMF_0064336 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0064329 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0064337 edam:has_input signature:MF_00643 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12239MF_0064326, 1, (STRLEN(?templateMotifCigarP12239MF_0064326) - STRLEN(REPLACE(?templateMotifCigarP12239MF_0064326, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionP1223927) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12239MF_0064328, 1, (STRLEN(?targetMotifMatchCigarP12239MF_0064328) - STRLEN(REPLACE(?targetMotifMatchCigarP12239MF_0064328, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12239MF_0064328, 1, (STRLEN(?targetMotifMatchCigarP12239MF_0064328) - STRLEN(REPLACE(?targetMotifMatchCigarP12239MF_0064328, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) . BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0064329) - 1) AS ?thisPositionOn17) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12239MF_0064326, 1, (STRLEN(?templateMotifCigarP12239MF_0064326) - STRLEN(REPLACE(?templateMotifCigarP12239MF_0064326, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP1223927) + 1)), '}'), '')))), '[a-z]', '')) AS ?step140) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12239MF_0064328, 1, (STRLEN(?targetMotifMatchCigarP12239MF_0064328) - STRLEN(REPLACE(?targetMotifMatchCigarP12239MF_0064328, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12239MF_0064328, 1, (STRLEN(?targetMotifMatchCigarP12239MF_0064328) - STRLEN(REPLACE(?targetMotifMatchCigarP12239MF_0064328, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step140), '}'), '')))), '[^-]', ''))) AS ?step241) . BIND(((?step241 + ?targetMotifMatchRegionMatchBeginPositionMF_0064329) - 1) AS ?thisPositionOn18) . BIND(?this AS ?pfs1t42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) . FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) . BIND(URI(CONCAT(STR(?this), '#MF_00643a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch47 faldo:location ?templateMotifSequenceMatchRegionP1223948 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1223950 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP12239MF_0064343 . ?templateMotifSequenceMatchRegionP1223948 faldo:begin ?templateMotifSequenceMatchBeginP1223949 . ?templateMotifSequenceMatchBeginP1223949 faldo:position ?templateMotifSequenceMatchBeginPositionP1223944 ; faldo:reference isoform:P12239-1 . ?templateMotifSequenceProfileAlignmentOperationP1223950 edam:has_input signature:MF_00643 ; rdf:type edam:operation_0300 . ?targetMotifMatch51 faldo:location ?targetMotifMatchRegionMatch52 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0064354 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP12239MF_0064345 . ?targetMotifMatchRegionMatch52 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0064353 . ?targetMotifMatchRegionMatchBeginMF_0064353 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0064346 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0064354 edam:has_input signature:MF_00643 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12239MF_0064343, 1, (STRLEN(?templateMotifCigarP12239MF_0064343) - STRLEN(REPLACE(?templateMotifCigarP12239MF_0064343, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionP1223944) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12239MF_0064345, 1, (STRLEN(?targetMotifMatchCigarP12239MF_0064345) - STRLEN(REPLACE(?targetMotifMatchCigarP12239MF_0064345, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12239MF_0064345, 1, (STRLEN(?targetMotifMatchCigarP12239MF_0064345) - STRLEN(REPLACE(?targetMotifMatchCigarP12239MF_0064345, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) . BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0064346) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00643a20')) AS ?annotation20) . BIND(?this AS ?pfs19) . } OPTIONAL { ?this a up:Protein . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } BIND(?this AS ?case6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33071 . BIND(?this AS ?case7) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1117 . BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33071 . })) . BIND(?this AS ?case9) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1117 . })) . BIND(?this AS ?case10) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33071 . FILTER (! (EXISTS { { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } })) . BIND(?this AS ?case11) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33071 . })) . BIND(?this AS ?case12) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_00643http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_00643#construct
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