| http://purl.uniprot.org/unirules/MF_00660#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:250768 up:source unirule:MF_00660 .
_:250769 up:source unirule:MF_00660 .
_:250770 up:source unirule:MF_00660 .
_:250771 up:source unirule:MF_00660 .
_:250772 up:source unirule:MF_00660 .
_:250773 up:source unirule:MF_00660 .
_:250774 up:source unirule:MF_00660 .
_:250775 up:source unirule:MF_00660 .
_:250776 up:source unirule:MF_00660 .
_:250777 up:source unirule:MF_00660 .
_:250778 up:source unirule:MF_00660 .
_:250779 up:source unirule:MF_00660 .
_:250780 up:source unirule:MF_00660 .
_:250781 up:source unirule:MF_00660 .
_:250782 up:source unirule:MF_00660 .
_:250783 up:source unirule:MF_00660 .
_:250784 up:source unirule:MF_00660 .
_:250785 up:source unirule:MF_00660 .
_:250786 up:source unirule:MF_00660 .
_:250787 up:source unirule:MF_00660 .
_:250788 up:source unirule:MF_00660 .
_:250789 up:source unirule:MF_00660 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0009975 ,
GO:0018189 ,
GO:1904047 ,
keyword:560 ,
keyword:884 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.21.98.4' ;
up:fullName 'PqqA peptide cyclase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Coenzyme PQQ synthesis protein E' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'pqqE' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ).' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; pyrroloquinoline quinone biosynthesis.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Interacts with PqqD. The interaction is necessary for activity of PqqE.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the radical SAM superfamily. PqqE family.' .
?case9 up:classifiedWith GO:0005506 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 ,
keyword:949 .
?pfs10 up:annotation ?annotation11 ,
?annotation17 ,
?annotation23 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:49883 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:49883 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:49883 .
_:250790 a rdf:Statement ;
up:attribution _:250768 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:250791 a rdf:Statement ;
up:attribution _:250769 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:250792 a rdf:Statement ;
up:attribution _:250770 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:250793 a rdf:Statement ;
up:attribution _:250771 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:250794 a rdf:Statement ;
up:attribution _:250772 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:250795 a rdf:Statement ;
up:attribution _:250773 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:250796 a rdf:Statement ;
up:attribution _:250774 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:250797 a rdf:Statement ;
up:attribution _:250775 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:250798 a rdf:Statement ;
up:attribution _:250776 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:250799 a rdf:Statement ;
up:attribution _:250777 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:884 .
_:250800 a rdf:Statement ;
up:attribution _:250778 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009975 .
_:250801 a rdf:Statement ;
up:attribution _:250779 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:1904047 .
_:250802 a rdf:Statement ;
up:attribution _:250780 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0018189 .
_:250803 a rdf:Statement ;
up:attribution _:250781 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:250804 a rdf:Statement ;
up:attribution _:250782 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:250805 a rdf:Statement ;
up:attribution _:250783 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:250806 a rdf:Statement ;
up:attribution _:250784 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:250807 a rdf:Statement ;
up:attribution _:250785 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:250808 a rdf:Statement ;
up:attribution _:250786 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:250809 a rdf:Statement ;
up:source unirule:MF_00660 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:250810 a rdf:Statement ;
up:attribution _:250787 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:250811 a rdf:Statement ;
up:source unirule:MF_00660 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:250812 a rdf:Statement ;
up:attribution _:250788 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:250813 a rdf:Statement ;
up:source unirule:MF_00660 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:250814 a rdf:Statement ;
up:attribution _:250789 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00660
#Rule MF_00660 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00660 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00660a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00660a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00660a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00660a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00660a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00660a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00660a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch33 faldo:location ?templateMotifSequenceMatchRegionP0778234 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0778236 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07782MF_0066029 .
?templateMotifSequenceMatchRegionP0778234 faldo:begin ?templateMotifSequenceMatchBeginP0778235 .
?templateMotifSequenceMatchBeginP0778235 faldo:position ?templateMotifSequenceMatchBeginPositionP0778230 ;
faldo:reference isoform:P07782-1 .
?templateMotifSequenceProfileAlignmentOperationP0778236 edam:has_input signature:MF_00660 ;
rdf:type edam:operation_0300 .
?targetMotifMatch37 faldo:location ?targetMotifMatchRegionMatch38 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0066040 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07782MF_0066031 .
?targetMotifMatchRegionMatch38 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0066039 .
?targetMotifMatchRegionMatchBeginMF_0066039 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0066032 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0066040 edam:has_input signature:MF_00660 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07782MF_0066029, 1, (STRLEN(?templateMotifCigarP07782MF_0066029) - STRLEN(REPLACE(?templateMotifCigarP07782MF_0066029, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP0778230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07782MF_0066031, 1, (STRLEN(?targetMotifMatchCigarP07782MF_0066031) - STRLEN(REPLACE(?targetMotifMatchCigarP07782MF_0066031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07782MF_0066031, 1, (STRLEN(?targetMotifMatchCigarP07782MF_0066031) - STRLEN(REPLACE(?targetMotifMatchCigarP07782MF_0066031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), '')))), '[^-]', ''))) AS ?step242) .
BIND(((?step242 + ?targetMotifMatchRegionMatchBeginPositionMF_0066032) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07782MF_0066029, 1, (STRLEN(?templateMotifCigarP07782MF_0066029) - STRLEN(REPLACE(?templateMotifCigarP07782MF_0066029, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP0778230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07782MF_0066031, 1, (STRLEN(?targetMotifMatchCigarP07782MF_0066031) - STRLEN(REPLACE(?targetMotifMatchCigarP07782MF_0066031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07782MF_0066031, 1, (STRLEN(?targetMotifMatchCigarP07782MF_0066031) - STRLEN(REPLACE(?targetMotifMatchCigarP07782MF_0066031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), '')))), '[^-]', ''))) AS ?step245) .
BIND(((?step245 + ?targetMotifMatchRegionMatchBeginPositionMF_0066032) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07782MF_0066029, 1, (STRLEN(?templateMotifCigarP07782MF_0066029) - STRLEN(REPLACE(?templateMotifCigarP07782MF_0066029, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionP0778230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07782MF_0066031, 1, (STRLEN(?targetMotifMatchCigarP07782MF_0066031) - STRLEN(REPLACE(?targetMotifMatchCigarP07782MF_0066031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07782MF_0066031, 1, (STRLEN(?targetMotifMatchCigarP07782MF_0066031) - STRLEN(REPLACE(?targetMotifMatchCigarP07782MF_0066031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0066032) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'C')) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag50) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag50, ?UNBOUND_VARIABLE) AS ?case9) .
}
"xsd:string |
