| http://purl.uniprot.org/unirules/MF_00685#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:256742 up:source unirule:MF_00685 .
_:256743 up:source unirule:MF_00685 .
_:256744 up:source unirule:MF_00685 .
_:256745 up:source unirule:MF_00685 .
_:256746 up:source unirule:MF_00685 .
_:256747 up:source unirule:MF_00685 .
_:256748 up:source unirule:MF_00685 .
_:256749 up:source unirule:MF_00685 .
_:256750 up:source unirule:MF_00685 .
_:256751 up:source unirule:MF_00685 .
_:256752 up:source unirule:MF_00685 .
_:256753 up:source unirule:MF_00685 .
_:256754 up:source unirule:MF_00685 .
_:256755 up:source unirule:MF_00685 .
_:256756 up:source unirule:MF_00685 .
_:256757 up:source unirule:MF_00685 .
_:256758 up:source unirule:MF_00685 .
_:256759 up:source unirule:MF_00685 .
_:256760 up:source unirule:MF_00685 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0003844 ,
GO:0005978 ,
keyword:119 ,
keyword:320 ,
keyword:321 ,
keyword:328 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.4.1.18' ;
up:fullName '1,4-alpha-glucan branching enzyme GlgB' ;
rdf:type up:Structured_Name .
?name1 up:fullName '1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Alpha-(1->4)-glucan branching enzyme' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Glycogen branching enzyme' ;
up:shortName 'BE' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'glgB' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:enzymeClass .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Glycan biosynthesis; glycogen biosynthesis.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
_:256761 a rdf:Statement ;
up:attribution _:256742 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:256762 a rdf:Statement ;
up:attribution _:256743 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:256763 a rdf:Statement ;
up:attribution _:256744 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:256764 a rdf:Statement ;
up:attribution _:256745 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:256765 a rdf:Statement ;
up:attribution _:256746 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:256766 a rdf:Statement ;
up:attribution _:256747 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:256767 a rdf:Statement ;
up:attribution _:256748 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:256768 a rdf:Statement ;
up:attribution _:256749 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:256769 a rdf:Statement ;
up:attribution _:256750 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:256770 a rdf:Statement ;
up:attribution _:256751 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:256771 a rdf:Statement ;
up:attribution _:256752 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:256772 a rdf:Statement ;
up:attribution _:256753 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:320 .
_:256773 a rdf:Statement ;
up:attribution _:256754 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:321 .
_:256774 a rdf:Statement ;
up:attribution _:256755 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:328 .
_:256775 a rdf:Statement ;
up:attribution _:256756 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:256776 a rdf:Statement ;
up:attribution _:256757 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003844 .
_:256777 a rdf:Statement ;
up:attribution _:256758 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005978 .
_:256778 a rdf:Statement ;
up:source unirule:MF_00685 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:256779 a rdf:Statement ;
up:attribution _:256759 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:256780 a rdf:Statement ;
up:source unirule:MF_00685 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:256781 a rdf:Statement ;
up:attribution _:256760 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00685
#Rule MF_00685 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-11-28
VALUES ?supertaxon23 {taxon:2 taxon:183967}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00685 .
?thisOrganism rdfs:subClassOf+ ?supertaxon23 .
BIND(URI(CONCAT(STR(?this), '#MF_00685a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00685a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00685a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00685a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_00685a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00685a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00685a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00685a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00685a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch28 faldo:location ?templateMotifSequenceMatchRegionP9WN4529 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WN4531 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WN45MF_0068524 .
?templateMotifSequenceMatchRegionP9WN4529 faldo:begin ?templateMotifSequenceMatchBeginP9WN4530 .
?templateMotifSequenceMatchBeginP9WN4530 faldo:position ?templateMotifSequenceMatchBeginPositionP9WN4525 ;
faldo:reference isoform:P9WN45-1 .
?templateMotifSequenceProfileAlignmentOperationP9WN4531 edam:has_input signature:MF_00685 ;
rdf:type edam:operation_0300 .
?targetMotifMatch32 faldo:location ?targetMotifMatchRegionMatch33 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0068535 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WN45MF_0068526 .
?targetMotifMatchRegionMatch33 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0068534 .
?targetMotifMatchRegionMatchBeginMF_0068534 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0068527 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0068535 edam:has_input signature:MF_00685 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WN45MF_0068524, 1, (STRLEN(?templateMotifCigarP9WN45MF_0068524) - STRLEN(REPLACE(?templateMotifCigarP9WN45MF_0068524, CONCAT('^(?:-*[^-]){', STR(((411 - ?templateMotifSequenceMatchBeginPositionP9WN4525) + 1)), '}'), '')))), '[a-z]', '')) AS ?step136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WN45MF_0068526, 1, (STRLEN(?targetMotifMatchCigarP9WN45MF_0068526) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN45MF_0068526, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WN45MF_0068526, 1, (STRLEN(?targetMotifMatchCigarP9WN45MF_0068526) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN45MF_0068526, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step136), '}'), '')))), '[^-]', ''))) AS ?step237) .
BIND(((?step237 + ?targetMotifMatchRegionMatchBeginPositionMF_0068527) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00685a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch43 faldo:location ?templateMotifSequenceMatchRegionP9WN4544 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WN4546 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WN45MF_0068539 .
?templateMotifSequenceMatchRegionP9WN4544 faldo:begin ?templateMotifSequenceMatchBeginP9WN4545 .
?templateMotifSequenceMatchBeginP9WN4545 faldo:position ?templateMotifSequenceMatchBeginPositionP9WN4540 ;
faldo:reference isoform:P9WN45-1 .
?templateMotifSequenceProfileAlignmentOperationP9WN4546 edam:has_input signature:MF_00685 ;
rdf:type edam:operation_0300 .
?targetMotifMatch47 faldo:location ?targetMotifMatchRegionMatch48 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0068550 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WN45MF_0068541 .
?targetMotifMatchRegionMatch48 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0068549 .
?targetMotifMatchRegionMatchBeginMF_0068549 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0068542 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0068550 edam:has_input signature:MF_00685 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WN45MF_0068539, 1, (STRLEN(?templateMotifCigarP9WN45MF_0068539) - STRLEN(REPLACE(?templateMotifCigarP9WN45MF_0068539, CONCAT('^(?:-*[^-]){', STR(((464 - ?templateMotifSequenceMatchBeginPositionP9WN4540) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WN45MF_0068541, 1, (STRLEN(?targetMotifMatchCigarP9WN45MF_0068541) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN45MF_0068541, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WN45MF_0068541, 1, (STRLEN(?targetMotifMatchCigarP9WN45MF_0068541) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN45MF_0068541, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0068542) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00685a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
}
"xsd:string |
