| http://purl.uniprot.org/unirules/MF_00687#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:257213 up:source unirule:MF_00687 .
_:257214 up:source unirule:MF_00687 .
_:257215 up:source unirule:MF_00687 .
_:257216 up:source unirule:MF_00687 .
_:257217 up:source unirule:MF_00687 .
_:257218 up:source unirule:MF_00687 .
_:257219 up:source unirule:MF_00687 .
_:257220 up:source unirule:MF_00687 .
_:257221 up:source unirule:MF_00687 .
_:257222 up:source unirule:MF_00687 .
_:257223 up:source unirule:MF_00687 .
_:257224 up:source unirule:MF_00687 .
_:257225 up:source unirule:MF_00687 .
_:257226 up:source unirule:MF_00687 .
_:257227 up:source unirule:MF_00687 .
_:257228 up:source unirule:MF_00687 .
_:257229 up:source unirule:MF_00687 .
_:257230 up:source unirule:MF_00687 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0008697 ,
GO:0045490 ,
keyword:413 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.3.1.17' ;
up:fullName '4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase' ;
rdf:type up:Structured_Name .
?name1 up:fullName '5-keto-4-deoxyuronate isomerase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'DKI isomerase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'kduI' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the isomerization of 5-dehydro-4-deoxy-D-glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 4/5.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the KduI family.' .
?case9 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 ,
?annotation30 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:29105 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29105 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29105 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:29105 .
_:257231 a rdf:Statement ;
up:attribution _:257213 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:257232 a rdf:Statement ;
up:attribution _:257214 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:257233 a rdf:Statement ;
up:attribution _:257215 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:257234 a rdf:Statement ;
up:attribution _:257216 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:257235 a rdf:Statement ;
up:attribution _:257217 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:257236 a rdf:Statement ;
up:attribution _:257218 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:257237 a rdf:Statement ;
up:attribution _:257219 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:257238 a rdf:Statement ;
up:attribution _:257220 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:257239 a rdf:Statement ;
up:attribution _:257221 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:257240 a rdf:Statement ;
up:attribution _:257222 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008697 .
_:257241 a rdf:Statement ;
up:attribution _:257223 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0045490 .
_:257242 a rdf:Statement ;
up:attribution _:257224 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:257243 a rdf:Statement ;
up:attribution _:257225 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:257244 a rdf:Statement ;
up:attribution _:257226 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:257245 a rdf:Statement ;
up:source unirule:MF_00687 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:257246 a rdf:Statement ;
up:attribution _:257227 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:257247 a rdf:Statement ;
up:source unirule:MF_00687 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:257248 a rdf:Statement ;
up:attribution _:257228 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:257249 a rdf:Statement ;
up:source unirule:MF_00687 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:257250 a rdf:Statement ;
up:attribution _:257229 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:257251 a rdf:Statement ;
up:source unirule:MF_00687 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:257252 a rdf:Statement ;
up:attribution _:257230 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00687
#Rule MF_00687 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00687 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00687a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00687a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00687a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00687a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00687a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00687a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00687a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionQ4693841 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ4693843 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46938MF_0068736 .
?templateMotifSequenceMatchRegionQ4693841 faldo:begin ?templateMotifSequenceMatchBeginQ4693842 .
?templateMotifSequenceMatchBeginQ4693842 faldo:position ?templateMotifSequenceMatchBeginPositionQ4693837 ;
faldo:reference isoform:Q46938-1 .
?templateMotifSequenceProfileAlignmentOperationQ4693843 edam:has_input signature:MF_00687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0068747 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46938MF_0068738 .
?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0068746 .
?targetMotifMatchRegionMatchBeginMF_0068746 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0068739 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0068747 edam:has_input signature:MF_00687 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46938MF_0068736, 1, (STRLEN(?templateMotifCigarQ46938MF_0068736) - STRLEN(REPLACE(?templateMotifCigarQ46938MF_0068736, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionQ4693837) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46938MF_0068738, 1, (STRLEN(?targetMotifMatchCigarQ46938MF_0068738) - STRLEN(REPLACE(?targetMotifMatchCigarQ46938MF_0068738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46938MF_0068738, 1, (STRLEN(?targetMotifMatchCigarQ46938MF_0068738) - STRLEN(REPLACE(?targetMotifMatchCigarQ46938MF_0068738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0068739) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46938MF_0068736, 1, (STRLEN(?templateMotifCigarQ46938MF_0068736) - STRLEN(REPLACE(?templateMotifCigarQ46938MF_0068736, CONCAT('^(?:-*[^-]){', STR(((198 - ?templateMotifSequenceMatchBeginPositionQ4693837) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46938MF_0068738, 1, (STRLEN(?targetMotifMatchCigarQ46938MF_0068738) - STRLEN(REPLACE(?targetMotifMatchCigarQ46938MF_0068738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46938MF_0068738, 1, (STRLEN(?targetMotifMatchCigarQ46938MF_0068738) - STRLEN(REPLACE(?targetMotifMatchCigarQ46938MF_0068738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0068739) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46938MF_0068736, 1, (STRLEN(?templateMotifCigarQ46938MF_0068736) - STRLEN(REPLACE(?templateMotifCigarQ46938MF_0068736, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionQ4693837) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46938MF_0068738, 1, (STRLEN(?targetMotifMatchCigarQ46938MF_0068738) - STRLEN(REPLACE(?targetMotifMatchCigarQ46938MF_0068738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46938MF_0068738, 1, (STRLEN(?targetMotifMatchCigarQ46938MF_0068738) - STRLEN(REPLACE(?targetMotifMatchCigarQ46938MF_0068738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0068739) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46938MF_0068736, 1, (STRLEN(?templateMotifCigarQ46938MF_0068736) - STRLEN(REPLACE(?templateMotifCigarQ46938MF_0068736, CONCAT('^(?:-*[^-]){', STR(((245 - ?templateMotifSequenceMatchBeginPositionQ4693837) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46938MF_0068738, 1, (STRLEN(?targetMotifMatchCigarQ46938MF_0068738) - STRLEN(REPLACE(?targetMotifMatchCigarQ46938MF_0068738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46938MF_0068738, 1, (STRLEN(?targetMotifMatchCigarQ46938MF_0068738) - STRLEN(REPLACE(?targetMotifMatchCigarQ46938MF_0068738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0068739) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'H')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag60) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag60, ?UNBOUND_VARIABLE) AS ?case9) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:561 .
BIND(?this AS ?case10) .
}
}
"xsd:string |
