| http://purl.uniprot.org/unirules/MF_00735#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:269599 up:source unirule:MF_00735 .
_:269600 up:source unirule:MF_00735 .
_:269601 up:source unirule:MF_00735 .
_:269602 up:source unirule:MF_00735 .
_:269603 up:source unirule:MF_00735 .
_:269604 up:source unirule:MF_00735 .
_:269605 up:source unirule:MF_00735 .
_:269606 up:source unirule:MF_00735 .
_:269607 up:source unirule:MF_00735 .
_:269608 up:source unirule:MF_00735 .
_:269609 up:source unirule:MF_00735 .
_:269610 up:source unirule:MF_00735 .
_:269611 up:source unirule:MF_00735 .
_:269612 up:source unirule:MF_00735 .
_:269613 up:source unirule:MF_00735 .
_:269614 up:source unirule:MF_00735 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0005737 ,
GO:0008276 ,
keyword:489 ,
keyword:808 ,
keyword:949 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.-' ;
up:fullName 'Ribosomal protein L11 methyltransferase' ;
up:shortName 'L11 Mtase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'prmA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Methylates ribosomal protein L11.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the methyltransferase superfamily. PrmA family.' .
?pfs8 up:annotation ?annotation9 ,
?annotation15 ,
?annotation21 ,
?annotation27 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:59789 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:59789 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:59789 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:59789 .
_:269615 a rdf:Statement ;
up:attribution _:269599 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:269616 a rdf:Statement ;
up:attribution _:269600 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:269617 a rdf:Statement ;
up:attribution _:269601 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:269618 a rdf:Statement ;
up:attribution _:269602 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:269619 a rdf:Statement ;
up:attribution _:269603 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:269620 a rdf:Statement ;
up:attribution _:269604 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:269621 a rdf:Statement ;
up:attribution _:269605 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:269622 a rdf:Statement ;
up:attribution _:269606 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:269623 a rdf:Statement ;
up:attribution _:269607 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:269624 a rdf:Statement ;
up:attribution _:269608 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:269625 a rdf:Statement ;
up:attribution _:269609 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008276 .
_:269626 a rdf:Statement ;
up:attribution _:269610 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:269627 a rdf:Statement ;
up:source unirule:MF_00735 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:269628 a rdf:Statement ;
up:attribution _:269611 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:269629 a rdf:Statement ;
up:source unirule:MF_00735 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:269630 a rdf:Statement ;
up:attribution _:269612 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:269631 a rdf:Statement ;
up:source unirule:MF_00735 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:269632 a rdf:Statement ;
up:attribution _:269613 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:269633 a rdf:Statement ;
up:source unirule:MF_00735 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:269634 a rdf:Statement ;
up:attribution _:269614 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00735
#Rule MF_00735 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00735 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00735a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00735a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00735a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00735a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00735a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch37 faldo:location ?templateMotifSequenceMatchRegionQ84BQ938 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ84BQ940 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ84BQ9MF_0073533 .
?templateMotifSequenceMatchRegionQ84BQ938 faldo:begin ?templateMotifSequenceMatchBeginQ84BQ939 .
?templateMotifSequenceMatchBeginQ84BQ939 faldo:position ?templateMotifSequenceMatchBeginPositionQ84BQ934 ;
faldo:reference isoform:Q84BQ9-1 .
?templateMotifSequenceProfileAlignmentOperationQ84BQ940 edam:has_input signature:MF_00735 ;
rdf:type edam:operation_0300 .
?targetMotifMatch41 faldo:location ?targetMotifMatchRegionMatch42 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0073544 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ84BQ9MF_0073535 .
?targetMotifMatchRegionMatch42 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0073543 .
?targetMotifMatchRegionMatchBeginMF_0073543 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0073536 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0073544 edam:has_input signature:MF_00735 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ84BQ9MF_0073533, 1, (STRLEN(?templateMotifCigarQ84BQ9MF_0073533) - STRLEN(REPLACE(?templateMotifCigarQ84BQ9MF_0073533, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionQ84BQ934) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ84BQ9MF_0073535, 1, (STRLEN(?targetMotifMatchCigarQ84BQ9MF_0073535) - STRLEN(REPLACE(?targetMotifMatchCigarQ84BQ9MF_0073535, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ84BQ9MF_0073535, 1, (STRLEN(?targetMotifMatchCigarQ84BQ9MF_0073535) - STRLEN(REPLACE(?targetMotifMatchCigarQ84BQ9MF_0073535, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0073536) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'T')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ84BQ9MF_0073533, 1, (STRLEN(?templateMotifCigarQ84BQ9MF_0073533) - STRLEN(REPLACE(?templateMotifCigarQ84BQ9MF_0073533, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionQ84BQ934) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ84BQ9MF_0073535, 1, (STRLEN(?targetMotifMatchCigarQ84BQ9MF_0073535) - STRLEN(REPLACE(?targetMotifMatchCigarQ84BQ9MF_0073535, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ84BQ9MF_0073535, 1, (STRLEN(?targetMotifMatchCigarQ84BQ9MF_0073535) - STRLEN(REPLACE(?targetMotifMatchCigarQ84BQ9MF_0073535, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0073536) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'G')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ84BQ9MF_0073533, 1, (STRLEN(?templateMotifCigarQ84BQ9MF_0073533) - STRLEN(REPLACE(?templateMotifCigarQ84BQ9MF_0073533, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionQ84BQ934) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ84BQ9MF_0073535, 1, (STRLEN(?targetMotifMatchCigarQ84BQ9MF_0073535) - STRLEN(REPLACE(?targetMotifMatchCigarQ84BQ9MF_0073535, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ84BQ9MF_0073535, 1, (STRLEN(?targetMotifMatchCigarQ84BQ9MF_0073535) - STRLEN(REPLACE(?targetMotifMatchCigarQ84BQ9MF_0073535, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0073536) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ84BQ9MF_0073533, 1, (STRLEN(?templateMotifCigarQ84BQ9MF_0073533) - STRLEN(REPLACE(?templateMotifCigarQ84BQ9MF_0073533, CONCAT('^(?:-*[^-]){', STR(((191 - ?templateMotifSequenceMatchBeginPositionQ84BQ934) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ84BQ9MF_0073535, 1, (STRLEN(?targetMotifMatchCigarQ84BQ9MF_0073535) - STRLEN(REPLACE(?targetMotifMatchCigarQ84BQ9MF_0073535, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ84BQ9MF_0073535, 1, (STRLEN(?targetMotifMatchCigarQ84BQ9MF_0073535) - STRLEN(REPLACE(?targetMotifMatchCigarQ84BQ9MF_0073535, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0073536) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'N')) .
BIND(?this AS ?pfs8) .
}
}
"xsd:string |
