| http://purl.uniprot.org/unirules/MF_00750#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:274180 up:source unirule:MF_00750 .
_:274181 up:source unirule:MF_00750 .
_:274182 up:source unirule:MF_00750 .
_:274183 up:source unirule:MF_00750 .
_:274184 up:source unirule:MF_00750 .
_:274185 up:source unirule:MF_00750 .
_:274186 up:source unirule:MF_00750 .
_:274187 up:source unirule:MF_00750 .
_:274188 up:source unirule:MF_00750 .
_:274189 up:source unirule:MF_00750 .
_:274190 up:source unirule:MF_00750 .
_:274191 up:source unirule:MF_00750 .
_:274192 up:source unirule:MF_00750 .
_:274193 up:source unirule:MF_00750 .
_:274194 up:source unirule:MF_00750 .
_:274195 up:source unirule:MF_00750 .
_:274196 up:source unirule:MF_00750 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0008812 ,
GO:0019285 ,
keyword:274 ,
keyword:285 ,
keyword:520 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.99.1' ;
up:fullName 'Oxygen-dependent choline dehydrogenase' ;
up:shortName 'CDH' ,
'CHD' ;
rdf:type up:Structured_Name .
?name1 up:ecName '1.2.1.8' ;
up:fullName 'Betaine aldehyde dehydrogenase' ;
up:shortName 'BADH' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'betA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:57692 ;
rdf:type up:Cofactor_Annotation .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the GMC oxidoreductase family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:57692 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
_:274197 a rdf:Statement ;
up:attribution _:274180 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:274198 a rdf:Statement ;
up:attribution _:274181 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:274199 a rdf:Statement ;
up:attribution _:274182 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:274200 a rdf:Statement ;
up:attribution _:274183 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:274201 a rdf:Statement ;
up:attribution _:274184 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:274202 a rdf:Statement ;
up:attribution _:274185 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:274203 a rdf:Statement ;
up:attribution _:274186 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:274204 a rdf:Statement ;
up:attribution _:274187 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:274205 a rdf:Statement ;
up:attribution _:274188 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:274206 a rdf:Statement ;
up:attribution _:274189 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:274207 a rdf:Statement ;
up:attribution _:274190 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:274208 a rdf:Statement ;
up:attribution _:274191 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:274 .
_:274209 a rdf:Statement ;
up:attribution _:274192 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:274210 a rdf:Statement ;
up:attribution _:274193 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008812 .
_:274211 a rdf:Statement ;
up:attribution _:274194 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019285 .
_:274212 a rdf:Statement ;
up:source unirule:MF_00750 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:274213 a rdf:Statement ;
up:attribution _:274195 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:274214 a rdf:Statement ;
up:source unirule:MF_00750 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:274215 a rdf:Statement ;
up:attribution _:274196 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00750
#Rule MF_00750 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon24 {taxon:1239 taxon:1224}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00750 .
?thisOrganism rdfs:subClassOf+ ?supertaxon24 .
BIND(URI(CONCAT(STR(?this), '#MF_00750a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00750a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00750a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00750a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00750a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00750a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00750a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00750a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionP1744430 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1744432 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17444MF_0075025 .
?templateMotifSequenceMatchRegionP1744430 faldo:begin ?templateMotifSequenceMatchBeginP1744431 .
?templateMotifSequenceMatchBeginP1744431 faldo:position ?templateMotifSequenceMatchBeginPositionP1744426 ;
faldo:reference isoform:P17444-1 .
?templateMotifSequenceProfileAlignmentOperationP1744432 edam:has_input signature:MF_00750 ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0075036 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17444MF_0075027 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0075035 .
?targetMotifMatchRegionMatchBeginMF_0075035 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0075028 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0075036 edam:has_input signature:MF_00750 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17444MF_0075025, 1, (STRLEN(?templateMotifCigarP17444MF_0075025) - STRLEN(REPLACE(?templateMotifCigarP17444MF_0075025, CONCAT('^(?:-*[^-]){', STR(((4 - ?templateMotifSequenceMatchBeginPositionP1744426) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17444MF_0075027, 1, (STRLEN(?targetMotifMatchCigarP17444MF_0075027) - STRLEN(REPLACE(?targetMotifMatchCigarP17444MF_0075027, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17444MF_0075027, 1, (STRLEN(?targetMotifMatchCigarP17444MF_0075027) - STRLEN(REPLACE(?targetMotifMatchCigarP17444MF_0075027, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0075028) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17444MF_0075025, 1, (STRLEN(?templateMotifCigarP17444MF_0075025) - STRLEN(REPLACE(?templateMotifCigarP17444MF_0075025, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP1744426) + 1)), '}'), '')))), '[a-z]', '')) AS ?step139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17444MF_0075027, 1, (STRLEN(?targetMotifMatchCigarP17444MF_0075027) - STRLEN(REPLACE(?targetMotifMatchCigarP17444MF_0075027, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17444MF_0075027, 1, (STRLEN(?targetMotifMatchCigarP17444MF_0075027) - STRLEN(REPLACE(?targetMotifMatchCigarP17444MF_0075027, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step139), '}'), '')))), '[^-]', ''))) AS ?step240) .
BIND(((?step240 + ?targetMotifMatchRegionMatchBeginPositionMF_0075028) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) .
BIND(URI(CONCAT(STR(?this), '#MF_00750a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch46 faldo:location ?templateMotifSequenceMatchRegionP1744447 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1744449 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17444MF_0075042 .
?templateMotifSequenceMatchRegionP1744447 faldo:begin ?templateMotifSequenceMatchBeginP1744448 .
?templateMotifSequenceMatchBeginP1744448 faldo:position ?templateMotifSequenceMatchBeginPositionP1744443 ;
faldo:reference isoform:P17444-1 .
?templateMotifSequenceProfileAlignmentOperationP1744449 edam:has_input signature:MF_00750 ;
rdf:type edam:operation_0300 .
?targetMotifMatch50 faldo:location ?targetMotifMatchRegionMatch51 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0075053 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17444MF_0075044 .
?targetMotifMatchRegionMatch51 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0075052 .
?targetMotifMatchRegionMatchBeginMF_0075052 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0075045 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0075053 edam:has_input signature:MF_00750 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17444MF_0075042, 1, (STRLEN(?templateMotifCigarP17444MF_0075042) - STRLEN(REPLACE(?templateMotifCigarP17444MF_0075042, CONCAT('^(?:-*[^-]){', STR(((473 - ?templateMotifSequenceMatchBeginPositionP1744443) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17444MF_0075044, 1, (STRLEN(?targetMotifMatchCigarP17444MF_0075044) - STRLEN(REPLACE(?targetMotifMatchCigarP17444MF_0075044, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17444MF_0075044, 1, (STRLEN(?targetMotifMatchCigarP17444MF_0075044) - STRLEN(REPLACE(?targetMotifMatchCigarP17444MF_0075044, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0075045) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00750a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
}
"xsd:string |
