| http://purl.uniprot.org/unirules/MF_00751#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:274539 up:source unirule:MF_00751 .
_:274540 up:source unirule:MF_00751 .
_:274541 up:source unirule:MF_00751 .
_:274542 up:source unirule:MF_00751 .
_:274543 up:source unirule:MF_00751 .
_:274544 up:source unirule:MF_00751 .
_:274545 up:source unirule:MF_00751 .
_:274546 up:source unirule:MF_00751 .
_:274547 up:source unirule:MF_00751 .
_:274548 up:source unirule:MF_00751 .
_:274549 up:source unirule:MF_00751 .
_:274550 up:source unirule:MF_00751 .
_:274551 up:source unirule:MF_00751 .
_:274552 up:source unirule:MF_00751 .
_:274553 up:source unirule:MF_00751 .
_:274554 up:source unirule:MF_00751 .
_:274555 up:source unirule:MF_00751 .
_:274556 up:source unirule:MF_00751 .
_:274557 up:source unirule:MF_00751 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0005886 ,
GO:0015031 ,
keyword:1003 ,
keyword:1133 ,
keyword:472 ,
keyword:653 ,
keyword:811 ,
keyword:812 ,
keyword:813 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Preprotein translocase subunit SecG' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Protein transport protein Sec61 subunit beta homolog' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'secG' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Involved in protein export. The function of the beta subunit is unknown, but it may be involved in stabilization of the trimeric complex.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Component of the protein translocase complex. Heterotrimer consisting of alpha (SecY), beta (SecG) and gamma (SecE) subunits. Can form oligomers of the heterotrimer.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the SEC61-beta family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Extracellular' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
_:274558 a rdf:Statement ;
up:attribution _:274539 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:274559 a rdf:Statement ;
up:attribution _:274540 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:274560 a rdf:Statement ;
up:attribution _:274541 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:274561 a rdf:Statement ;
up:attribution _:274542 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:274562 a rdf:Statement ;
up:attribution _:274543 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:274563 a rdf:Statement ;
up:attribution _:274544 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:274564 a rdf:Statement ;
up:attribution _:274545 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:274565 a rdf:Statement ;
up:attribution _:274546 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:274566 a rdf:Statement ;
up:attribution _:274547 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:274567 a rdf:Statement ;
up:attribution _:274548 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:653 .
_:274568 a rdf:Statement ;
up:attribution _:274549 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:811 .
_:274569 a rdf:Statement ;
up:attribution _:274550 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:274570 a rdf:Statement ;
up:attribution _:274551 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:274571 a rdf:Statement ;
up:attribution _:274552 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:274572 a rdf:Statement ;
up:attribution _:274553 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015031 .
_:274573 a rdf:Statement ;
up:attribution _:274554 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:274574 a rdf:Statement ;
up:source unirule:MF_00751 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:274575 a rdf:Statement ;
up:attribution _:274555 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:274576 a rdf:Statement ;
up:source unirule:MF_00751 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:274577 a rdf:Statement ;
up:attribution _:274556 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:274578 a rdf:Statement ;
up:source unirule:MF_00751 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:274579 a rdf:Statement ;
up:attribution _:274557 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00751
#Rule MF_00751 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2019-11-18
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00751 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00751a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00751a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00751a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00751a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00751a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00751a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch30 faldo:location ?templateMotifSequenceMatchRegionP6046031 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6046033 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60460MF_0075126 .
?templateMotifSequenceMatchRegionP6046031 faldo:begin ?templateMotifSequenceMatchBeginP6046032 .
?templateMotifSequenceMatchBeginP6046032 faldo:position ?templateMotifSequenceMatchBeginPositionP6046027 ;
faldo:reference isoform:P60460-1 .
?templateMotifSequenceProfileAlignmentOperationP6046033 edam:has_input signature:MF_00751 ;
rdf:type edam:operation_0300 .
?targetMotifMatch34 faldo:location ?targetMotifMatchRegionMatch35 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0075137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60460MF_0075128 .
?targetMotifMatchRegionMatch35 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0075136 .
?targetMotifMatchRegionMatchBeginMF_0075136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0075129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0075137 edam:has_input signature:MF_00751 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60460MF_0075126, 1, (STRLEN(?templateMotifCigarP60460MF_0075126) - STRLEN(REPLACE(?templateMotifCigarP60460MF_0075126, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionP6046027) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60460MF_0075128, 1, (STRLEN(?targetMotifMatchCigarP60460MF_0075128) - STRLEN(REPLACE(?targetMotifMatchCigarP60460MF_0075128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60460MF_0075128, 1, (STRLEN(?targetMotifMatchCigarP60460MF_0075128) - STRLEN(REPLACE(?targetMotifMatchCigarP60460MF_0075128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) .
BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0075129) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((BOUND(?thisPositionOn12) && BOUND(?thisPositionOn13))) .
BIND(URI(CONCAT(STR(?this), '#MF_00751a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionP6046046 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6046048 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60460MF_0075141 .
?templateMotifSequenceMatchRegionP6046046 faldo:begin ?templateMotifSequenceMatchBeginP6046047 .
?templateMotifSequenceMatchBeginP6046047 faldo:position ?templateMotifSequenceMatchBeginPositionP6046042 ;
faldo:reference isoform:P60460-1 .
?templateMotifSequenceProfileAlignmentOperationP6046048 edam:has_input signature:MF_00751 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0075152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60460MF_0075143 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0075151 .
?targetMotifMatchRegionMatchBeginMF_0075151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0075144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0075152 edam:has_input signature:MF_00751 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60460MF_0075141, 1, (STRLEN(?templateMotifCigarP60460MF_0075141) - STRLEN(REPLACE(?templateMotifCigarP60460MF_0075141, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionP6046042) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60460MF_0075143, 1, (STRLEN(?targetMotifMatchCigarP60460MF_0075143) - STRLEN(REPLACE(?targetMotifMatchCigarP60460MF_0075143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60460MF_0075143, 1, (STRLEN(?targetMotifMatchCigarP60460MF_0075143) - STRLEN(REPLACE(?targetMotifMatchCigarP60460MF_0075143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0075144) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60460MF_0075141, 1, (STRLEN(?templateMotifCigarP60460MF_0075141) - STRLEN(REPLACE(?templateMotifCigarP60460MF_0075141, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionP6046042) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60460MF_0075143, 1, (STRLEN(?targetMotifMatchCigarP60460MF_0075143) - STRLEN(REPLACE(?targetMotifMatchCigarP60460MF_0075143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60460MF_0075143, 1, (STRLEN(?targetMotifMatchCigarP60460MF_0075143) - STRLEN(REPLACE(?targetMotifMatchCigarP60460MF_0075143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0075144) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) .
BIND(URI(CONCAT(STR(?this), '#MF_00751a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionP6046063 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6046065 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60460MF_0075158 .
?templateMotifSequenceMatchRegionP6046063 faldo:begin ?templateMotifSequenceMatchBeginP6046064 .
?templateMotifSequenceMatchBeginP6046064 faldo:position ?templateMotifSequenceMatchBeginPositionP6046059 ;
faldo:reference isoform:P60460-1 .
?templateMotifSequenceProfileAlignmentOperationP6046065 edam:has_input signature:MF_00751 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0075169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60460MF_0075160 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0075168 .
?targetMotifMatchRegionMatchBeginMF_0075168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0075161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0075169 edam:has_input signature:MF_00751 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60460MF_0075158, 1, (STRLEN(?templateMotifCigarP60460MF_0075158) - STRLEN(REPLACE(?templateMotifCigarP60460MF_0075158, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionP6046059) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60460MF_0075160, 1, (STRLEN(?targetMotifMatchCigarP60460MF_0075160) - STRLEN(REPLACE(?targetMotifMatchCigarP60460MF_0075160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60460MF_0075160, 1, (STRLEN(?targetMotifMatchCigarP60460MF_0075160) - STRLEN(REPLACE(?targetMotifMatchCigarP60460MF_0075160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0075161) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(URI(CONCAT(STR(?this), '#MF_00751a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
}
"xsd:string |
