| http://purl.uniprot.org/unirules/MF_00770#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:279020 up:source unirule:MF_00770 .
_:279021 up:source unirule:MF_00770 .
_:279022 up:source unirule:MF_00770 .
_:279023 up:source unirule:MF_00770 .
_:279024 up:source unirule:MF_00770 .
_:279025 up:source unirule:MF_00770 .
_:279026 up:source unirule:MF_00770 .
_:279027 up:source unirule:MF_00770 .
_:279028 up:source unirule:MF_00770 .
_:279029 up:source unirule:MF_00770 .
_:279030 up:source unirule:MF_00770 .
_:279031 up:source unirule:MF_00770 .
_:279032 up:source unirule:MF_00770 .
_:279033 up:source unirule:MF_00770 .
_:279034 up:source unirule:MF_00770 .
_:279035 up:source unirule:MF_00770 .
_:279036 up:source unirule:MF_00770 .
_:279037 up:source unirule:MF_00770 .
_:279038 up:source unirule:MF_00770 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0005737 ,
GO:0008994 ,
GO:0019301 ,
keyword:456 ,
keyword:684 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.2.19' ;
up:fullName 'Rhamnulose-1-phosphate aldolase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'rhaD' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; L-rhamnose degradation; glycerone phosphate from L-rhamnose: step 3/3.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the aldolase class II family. RhaD subfamily.' .
?case9 up:classifiedWith keyword:479 ,
keyword:862 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:29105 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29105 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29105 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Active_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
_:279039 a rdf:Statement ;
up:attribution _:279020 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:279040 a rdf:Statement ;
up:attribution _:279021 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:279041 a rdf:Statement ;
up:attribution _:279022 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:279042 a rdf:Statement ;
up:attribution _:279023 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:279043 a rdf:Statement ;
up:attribution _:279024 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:279044 a rdf:Statement ;
up:attribution _:279025 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:279045 a rdf:Statement ;
up:attribution _:279026 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:279046 a rdf:Statement ;
up:attribution _:279027 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:279047 a rdf:Statement ;
up:attribution _:279028 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:279048 a rdf:Statement ;
up:attribution _:279029 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:684 .
_:279049 a rdf:Statement ;
up:attribution _:279030 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008994 .
_:279050 a rdf:Statement ;
up:attribution _:279031 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019301 .
_:279051 a rdf:Statement ;
up:attribution _:279032 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:279052 a rdf:Statement ;
up:attribution _:279033 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:279053 a rdf:Statement ;
up:attribution _:279034 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:279054 a rdf:Statement ;
up:source unirule:MF_00770 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:279055 a rdf:Statement ;
up:attribution _:279035 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:279056 a rdf:Statement ;
up:source unirule:MF_00770 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:279057 a rdf:Statement ;
up:attribution _:279036 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:279058 a rdf:Statement ;
up:source unirule:MF_00770 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:279059 a rdf:Statement ;
up:attribution _:279037 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:279060 a rdf:Statement ;
up:source unirule:MF_00770 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:279061 a rdf:Statement ;
up:attribution _:279038 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00770
#Rule MF_00770 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-03-12
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00770 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00770a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00770a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00770a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00770a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00770a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00770a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionP3216941 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3216943 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32169MF_0077036 .
?templateMotifSequenceMatchRegionP3216941 faldo:begin ?templateMotifSequenceMatchBeginP3216942 .
?templateMotifSequenceMatchBeginP3216942 faldo:position ?templateMotifSequenceMatchBeginPositionP3216937 ;
faldo:reference isoform:P32169-1 .
?templateMotifSequenceProfileAlignmentOperationP3216943 edam:has_input signature:MF_00770 ;
rdf:type edam:operation_0300 .
?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0077047 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32169MF_0077038 .
?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0077046 .
?targetMotifMatchRegionMatchBeginMF_0077046 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0077039 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0077047 edam:has_input signature:MF_00770 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32169MF_0077036, 1, (STRLEN(?templateMotifCigarP32169MF_0077036) - STRLEN(REPLACE(?templateMotifCigarP32169MF_0077036, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionP3216937) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32169MF_0077038, 1, (STRLEN(?targetMotifMatchCigarP32169MF_0077038) - STRLEN(REPLACE(?targetMotifMatchCigarP32169MF_0077038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32169MF_0077038, 1, (STRLEN(?targetMotifMatchCigarP32169MF_0077038) - STRLEN(REPLACE(?targetMotifMatchCigarP32169MF_0077038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0077039) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32169MF_0077036, 1, (STRLEN(?templateMotifCigarP32169MF_0077036) - STRLEN(REPLACE(?templateMotifCigarP32169MF_0077036, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionP3216937) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32169MF_0077038, 1, (STRLEN(?targetMotifMatchCigarP32169MF_0077038) - STRLEN(REPLACE(?targetMotifMatchCigarP32169MF_0077038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32169MF_0077038, 1, (STRLEN(?targetMotifMatchCigarP32169MF_0077038) - STRLEN(REPLACE(?targetMotifMatchCigarP32169MF_0077038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0077039) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32169MF_0077036, 1, (STRLEN(?templateMotifCigarP32169MF_0077036) - STRLEN(REPLACE(?templateMotifCigarP32169MF_0077036, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP3216937) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32169MF_0077038, 1, (STRLEN(?targetMotifMatchCigarP32169MF_0077038) - STRLEN(REPLACE(?targetMotifMatchCigarP32169MF_0077038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32169MF_0077038, 1, (STRLEN(?targetMotifMatchCigarP32169MF_0077038) - STRLEN(REPLACE(?targetMotifMatchCigarP32169MF_0077038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0077039) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionP3216962 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3216964 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32169MF_0077057 .
?templateMotifSequenceMatchRegionP3216962 faldo:begin ?templateMotifSequenceMatchBeginP3216963 .
?templateMotifSequenceMatchBeginP3216963 faldo:position ?templateMotifSequenceMatchBeginPositionP3216958 ;
faldo:reference isoform:P32169-1 .
?templateMotifSequenceProfileAlignmentOperationP3216964 edam:has_input signature:MF_00770 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0077068 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32169MF_0077059 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0077067 .
?targetMotifMatchRegionMatchBeginMF_0077067 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0077060 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0077068 edam:has_input signature:MF_00770 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32169MF_0077057, 1, (STRLEN(?templateMotifCigarP32169MF_0077057) - STRLEN(REPLACE(?templateMotifCigarP32169MF_0077057, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionP3216958) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32169MF_0077059, 1, (STRLEN(?targetMotifMatchCigarP32169MF_0077059) - STRLEN(REPLACE(?targetMotifMatchCigarP32169MF_0077059, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32169MF_0077059, 1, (STRLEN(?targetMotifMatchCigarP32169MF_0077059) - STRLEN(REPLACE(?targetMotifMatchCigarP32169MF_0077059, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0077060) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs2t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00770a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag72) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag72, ?UNBOUND_VARIABLE) AS ?case9) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case10) .
}
}
"xsd:string |
