| http://purl.uniprot.org/unirules/MF_00786#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:283861 up:source unirule:MF_00786 .
_:283862 up:source unirule:MF_00786 .
_:283863 up:source unirule:MF_00786 .
_:283864 up:source unirule:MF_00786 .
_:283865 up:source unirule:MF_00786 .
_:283866 up:source unirule:MF_00786 .
_:283867 up:source unirule:MF_00786 .
_:283868 up:source unirule:MF_00786 .
_:283869 up:source unirule:MF_00786 .
_:283870 up:source unirule:MF_00786 .
_:283871 up:source unirule:MF_00786 .
_:283872 up:source unirule:MF_00786 .
_:283873 up:source unirule:MF_00786 .
_:283874 up:source unirule:MF_00786 .
_:283875 up:source unirule:MF_00786 .
_:283876 up:source unirule:MF_00786 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0008168 ,
GO:0019251 ,
keyword:169 ,
keyword:489 ,
keyword:808 ,
keyword:949 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.196' ;
up:fullName 'Probable cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating)' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'cbiT' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the methylation of C-15 in cobalt-precorrin-6B followed by the decarboxylation of C-12 to form cobalt-precorrin-7.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; adenosylcobalamin biosynthesis; cob(II)yrinate a,c-diamide from sirohydrochlorin (anaerobic route): step 8/10.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the methyltransferase superfamily. Archaeal-type CbiT family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:59789 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:59789 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:59789 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:59789 .
_:283877 a rdf:Statement ;
up:attribution _:283861 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:283878 a rdf:Statement ;
up:attribution _:283862 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:283879 a rdf:Statement ;
up:attribution _:283863 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:283880 a rdf:Statement ;
up:attribution _:283864 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:283881 a rdf:Statement ;
up:attribution _:283865 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:283882 a rdf:Statement ;
up:attribution _:283866 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:283883 a rdf:Statement ;
up:attribution _:283867 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:169 .
_:283884 a rdf:Statement ;
up:attribution _:283868 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:283885 a rdf:Statement ;
up:attribution _:283869 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:283886 a rdf:Statement ;
up:attribution _:283870 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:283887 a rdf:Statement ;
up:attribution _:283871 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008168 .
_:283888 a rdf:Statement ;
up:attribution _:283872 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019251 .
_:283889 a rdf:Statement ;
up:source unirule:MF_00786 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:283890 a rdf:Statement ;
up:attribution _:283873 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:283891 a rdf:Statement ;
up:source unirule:MF_00786 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:283892 a rdf:Statement ;
up:attribution _:283874 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:283893 a rdf:Statement ;
up:source unirule:MF_00786 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:283894 a rdf:Statement ;
up:attribution _:283875 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:283895 a rdf:Statement ;
up:source unirule:MF_00786 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:283896 a rdf:Statement ;
up:attribution _:283876 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00786
#Rule MF_00786 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00786 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00786a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00786a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00786a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00786a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00786a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionO2624940 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2624942 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26249MF_0078635 .
?templateMotifSequenceMatchRegionO2624940 faldo:begin ?templateMotifSequenceMatchBeginO2624941 .
?templateMotifSequenceMatchBeginO2624941 faldo:position ?templateMotifSequenceMatchBeginPositionO2624936 ;
faldo:reference isoform:O26249-1 .
?templateMotifSequenceProfileAlignmentOperationO2624942 edam:has_input signature:MF_00786 ;
rdf:type edam:operation_0300 .
?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0078646 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26249MF_0078637 .
?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0078645 .
?targetMotifMatchRegionMatchBeginMF_0078645 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0078638 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0078646 edam:has_input signature:MF_00786 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26249MF_0078635, 1, (STRLEN(?templateMotifCigarO26249MF_0078635) - STRLEN(REPLACE(?templateMotifCigarO26249MF_0078635, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionO2624936) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26249MF_0078637, 1, (STRLEN(?targetMotifMatchCigarO26249MF_0078637) - STRLEN(REPLACE(?targetMotifMatchCigarO26249MF_0078637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26249MF_0078637, 1, (STRLEN(?targetMotifMatchCigarO26249MF_0078637) - STRLEN(REPLACE(?targetMotifMatchCigarO26249MF_0078637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0078638) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26249MF_0078635, 1, (STRLEN(?templateMotifCigarO26249MF_0078635) - STRLEN(REPLACE(?templateMotifCigarO26249MF_0078635, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionO2624936) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26249MF_0078637, 1, (STRLEN(?targetMotifMatchCigarO26249MF_0078637) - STRLEN(REPLACE(?targetMotifMatchCigarO26249MF_0078637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26249MF_0078637, 1, (STRLEN(?targetMotifMatchCigarO26249MF_0078637) - STRLEN(REPLACE(?targetMotifMatchCigarO26249MF_0078637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) .
BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0078638) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX][GC][TS]G', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00786a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch56 faldo:location ?templateMotifSequenceMatchRegionO2624957 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2624959 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26249MF_0078652 .
?templateMotifSequenceMatchRegionO2624957 faldo:begin ?templateMotifSequenceMatchBeginO2624958 .
?templateMotifSequenceMatchBeginO2624958 faldo:position ?templateMotifSequenceMatchBeginPositionO2624953 ;
faldo:reference isoform:O26249-1 .
?templateMotifSequenceProfileAlignmentOperationO2624959 edam:has_input signature:MF_00786 ;
rdf:type edam:operation_0300 .
?targetMotifMatch60 faldo:location ?targetMotifMatchRegionMatch61 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0078663 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26249MF_0078654 .
?targetMotifMatchRegionMatch61 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0078662 .
?targetMotifMatchRegionMatchBeginMF_0078662 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0078655 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0078663 edam:has_input signature:MF_00786 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26249MF_0078652, 1, (STRLEN(?templateMotifCigarO26249MF_0078652) - STRLEN(REPLACE(?templateMotifCigarO26249MF_0078652, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionO2624953) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26249MF_0078654, 1, (STRLEN(?targetMotifMatchCigarO26249MF_0078654) - STRLEN(REPLACE(?targetMotifMatchCigarO26249MF_0078654, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26249MF_0078654, 1, (STRLEN(?targetMotifMatchCigarO26249MF_0078654) - STRLEN(REPLACE(?targetMotifMatchCigarO26249MF_0078654, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) .
BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0078655) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00786a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch71 faldo:location ?templateMotifSequenceMatchRegionO2624972 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2624974 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26249MF_0078667 .
?templateMotifSequenceMatchRegionO2624972 faldo:begin ?templateMotifSequenceMatchBeginO2624973 .
?templateMotifSequenceMatchBeginO2624973 faldo:position ?templateMotifSequenceMatchBeginPositionO2624968 ;
faldo:reference isoform:O26249-1 .
?templateMotifSequenceProfileAlignmentOperationO2624974 edam:has_input signature:MF_00786 ;
rdf:type edam:operation_0300 .
?targetMotifMatch75 faldo:location ?targetMotifMatchRegionMatch76 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0078678 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26249MF_0078669 .
?targetMotifMatchRegionMatch76 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0078677 .
?targetMotifMatchRegionMatchBeginMF_0078677 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0078670 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0078678 edam:has_input signature:MF_00786 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26249MF_0078667, 1, (STRLEN(?templateMotifCigarO26249MF_0078667) - STRLEN(REPLACE(?templateMotifCigarO26249MF_0078667, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionO2624968) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26249MF_0078669, 1, (STRLEN(?targetMotifMatchCigarO26249MF_0078669) - STRLEN(REPLACE(?targetMotifMatchCigarO26249MF_0078669, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26249MF_0078669, 1, (STRLEN(?targetMotifMatchCigarO26249MF_0078669) - STRLEN(REPLACE(?targetMotifMatchCigarO26249MF_0078669, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0078670) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00786a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionO2624987 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2624989 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26249MF_0078682 .
?templateMotifSequenceMatchRegionO2624987 faldo:begin ?templateMotifSequenceMatchBeginO2624988 .
?templateMotifSequenceMatchBeginO2624988 faldo:position ?templateMotifSequenceMatchBeginPositionO2624983 ;
faldo:reference isoform:O26249-1 .
?templateMotifSequenceProfileAlignmentOperationO2624989 edam:has_input signature:MF_00786 ;
rdf:type edam:operation_0300 .
?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0078693 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26249MF_0078684 .
?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0078692 .
?targetMotifMatchRegionMatchBeginMF_0078692 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0078685 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0078693 edam:has_input signature:MF_00786 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26249MF_0078682, 1, (STRLEN(?templateMotifCigarO26249MF_0078682) - STRLEN(REPLACE(?templateMotifCigarO26249MF_0078682, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionO2624983) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26249MF_0078684, 1, (STRLEN(?targetMotifMatchCigarO26249MF_0078684) - STRLEN(REPLACE(?targetMotifMatchCigarO26249MF_0078684, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26249MF_0078684, 1, (STRLEN(?targetMotifMatchCigarO26249MF_0078684) - STRLEN(REPLACE(?targetMotifMatchCigarO26249MF_0078684, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0078685) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER (REGEX('[AVG]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00786a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
}
"xsd:string |
