| http://purl.uniprot.org/unirules/MF_00801#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:286149 up:source unirule:MF_00801 .
_:286150 up:source unirule:MF_00801 .
_:286151 up:source unirule:MF_00801 .
_:286152 up:source unirule:MF_00801 .
_:286153 up:source unirule:MF_00801 .
_:286154 up:source unirule:MF_00801 .
_:286155 up:source unirule:MF_00801 .
_:286156 up:source unirule:MF_00801 .
_:286157 up:source unirule:MF_00801 .
_:286158 up:source unirule:MF_00801 .
_:286159 up:source unirule:MF_00801 .
_:286160 up:source unirule:MF_00801 .
_:286161 up:source unirule:MF_00801 .
_:286162 up:source unirule:MF_00801 .
_:286163 up:source unirule:MF_00801 .
_:286164 up:source unirule:MF_00801 .
_:286165 up:source unirule:MF_00801 .
_:286166 up:source unirule:MF_00801 .
_:286167 up:source unirule:MF_00801 .
_:286168 up:source unirule:MF_00801 .
_:286169 up:source unirule:MF_00801 .
_:286170 up:source unirule:MF_00801 .
_:286171 up:source unirule:MF_00801 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005737 ,
GO:0006281 ,
GO:0043737 ,
keyword:227 ,
keyword:234 ,
keyword:255 ,
keyword:378 ,
keyword:540 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.21.7' ;
up:fullName 'Endonuclease V' ;
rdf:type up:Structured_Name .
?name1 up:fullName "Deoxyinosine 3'endonuclease" ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Deoxyribonuclease V' ;
up:shortName 'DNase V' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'nfi' .
?annotation4 a up:Function_Annotation ;
rdfs:comment "DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA." .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:enzymeClass .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the endonuclease V family.' .
?case10 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:18420 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:18420 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with target DNA' .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
_:286172 a rdf:Statement ;
up:attribution _:286149 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:286173 a rdf:Statement ;
up:attribution _:286150 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:286174 a rdf:Statement ;
up:attribution _:286151 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:286175 a rdf:Statement ;
up:attribution _:286152 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:286176 a rdf:Statement ;
up:attribution _:286153 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:286177 a rdf:Statement ;
up:attribution _:286154 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:286178 a rdf:Statement ;
up:attribution _:286155 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:286179 a rdf:Statement ;
up:attribution _:286156 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:286180 a rdf:Statement ;
up:attribution _:286157 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:286181 a rdf:Statement ;
up:attribution _:286158 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:227 .
_:286182 a rdf:Statement ;
up:attribution _:286159 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:234 .
_:286183 a rdf:Statement ;
up:attribution _:286160 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:255 .
_:286184 a rdf:Statement ;
up:attribution _:286161 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:286185 a rdf:Statement ;
up:attribution _:286162 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:540 .
_:286186 a rdf:Statement ;
up:attribution _:286163 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043737 .
_:286187 a rdf:Statement ;
up:attribution _:286164 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006281 .
_:286188 a rdf:Statement ;
up:attribution _:286165 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:286189 a rdf:Statement ;
up:attribution _:286166 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:286190 a rdf:Statement ;
up:attribution _:286167 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:286191 a rdf:Statement ;
up:attribution _:286168 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:286192 a rdf:Statement ;
up:source unirule:MF_00801 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:286193 a rdf:Statement ;
up:attribution _:286169 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:286194 a rdf:Statement ;
up:source unirule:MF_00801 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:286195 a rdf:Statement ;
up:attribution _:286170 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:286196 a rdf:Statement ;
up:source unirule:MF_00801 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:286197 a rdf:Statement ;
up:attribution _:286171 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00801
#Rule MF_00801 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2022-11-19
VALUES ?supertaxon30 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00801 .
?thisOrganism rdfs:subClassOf+ ?supertaxon30 .
BIND(URI(CONCAT(STR(?this), '#MF_00801a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00801a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00801a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00801a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00801a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00801a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00801a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch35 faldo:location ?templateMotifSequenceMatchRegionQ9X2H936 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X2H938 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X2H9MF_0080131 .
?templateMotifSequenceMatchRegionQ9X2H936 faldo:begin ?templateMotifSequenceMatchBeginQ9X2H937 .
?templateMotifSequenceMatchBeginQ9X2H937 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X2H932 ;
faldo:reference isoform:Q9X2H9-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X2H938 edam:has_input signature:MF_00801 ;
rdf:type edam:operation_0300 .
?targetMotifMatch39 faldo:location ?targetMotifMatchRegionMatch40 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0080142 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X2H9MF_0080133 .
?targetMotifMatchRegionMatch40 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0080141 .
?targetMotifMatchRegionMatchBeginMF_0080141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0080134 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0080142 edam:has_input signature:MF_00801 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X2H9MF_0080131, 1, (STRLEN(?templateMotifCigarQ9X2H9MF_0080131) - STRLEN(REPLACE(?templateMotifCigarQ9X2H9MF_0080131, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionQ9X2H932) + 1)), '}'), '')))), '[a-z]', '')) AS ?step143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X2H9MF_0080133, 1, (STRLEN(?targetMotifMatchCigarQ9X2H9MF_0080133) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X2H9MF_0080133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X2H9MF_0080133, 1, (STRLEN(?targetMotifMatchCigarQ9X2H9MF_0080133) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X2H9MF_0080133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), '')))), '[^-]', ''))) AS ?step244) .
BIND(((?step244 + ?targetMotifMatchRegionMatchBeginPositionMF_0080134) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X2H9MF_0080131, 1, (STRLEN(?templateMotifCigarQ9X2H9MF_0080131) - STRLEN(REPLACE(?templateMotifCigarQ9X2H9MF_0080131, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionQ9X2H932) + 1)), '}'), '')))), '[a-z]', '')) AS ?step146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X2H9MF_0080133, 1, (STRLEN(?targetMotifMatchCigarQ9X2H9MF_0080133) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X2H9MF_0080133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X2H9MF_0080133, 1, (STRLEN(?targetMotifMatchCigarQ9X2H9MF_0080133) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X2H9MF_0080133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), '')))), '[^-]', ''))) AS ?step247) .
BIND(((?step247 + ?targetMotifMatchRegionMatchBeginPositionMF_0080134) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER (REGEX('[DEN]', SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1))) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch53 faldo:location ?templateMotifSequenceMatchRegionQ9X2H954 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X2H956 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X2H9MF_0080149 .
?templateMotifSequenceMatchRegionQ9X2H954 faldo:begin ?templateMotifSequenceMatchBeginQ9X2H955 .
?templateMotifSequenceMatchBeginQ9X2H955 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X2H950 ;
faldo:reference isoform:Q9X2H9-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X2H956 edam:has_input signature:MF_00801 ;
rdf:type edam:operation_0300 .
?targetMotifMatch57 faldo:location ?targetMotifMatchRegionMatch58 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0080160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X2H9MF_0080151 .
?targetMotifMatchRegionMatch58 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0080159 .
?targetMotifMatchRegionMatchBeginMF_0080159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0080152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0080160 edam:has_input signature:MF_00801 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X2H9MF_0080149, 1, (STRLEN(?templateMotifCigarQ9X2H9MF_0080149) - STRLEN(REPLACE(?templateMotifCigarQ9X2H9MF_0080149, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionQ9X2H950) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X2H9MF_0080151, 1, (STRLEN(?targetMotifMatchCigarQ9X2H9MF_0080151) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X2H9MF_0080151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X2H9MF_0080151, 1, (STRLEN(?targetMotifMatchCigarQ9X2H9MF_0080151) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X2H9MF_0080151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) .
BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0080152) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs2t63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00801a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag64) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag64, ?UNBOUND_VARIABLE) AS ?case10) .
}
"xsd:string |
