| http://purl.uniprot.org/unirules/MF_00811#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:289800 up:source unirule:MF_00811 .
_:289801 up:source unirule:MF_00811 .
_:289802 up:source unirule:MF_00811 .
_:289803 up:source unirule:MF_00811 .
_:289804 up:source unirule:MF_00811 .
_:289805 up:source unirule:MF_00811 .
_:289806 up:source unirule:MF_00811 .
_:289807 up:source unirule:MF_00811 .
_:289808 up:source unirule:MF_00811 .
_:289809 up:source unirule:MF_00811 .
_:289810 up:source unirule:MF_00811 .
_:289811 up:source unirule:MF_00811 .
_:289812 up:source unirule:MF_00811 .
_:289813 up:source unirule:MF_00811 .
_:289814 up:source unirule:MF_00811 .
_:289815 up:source unirule:MF_00811 .
_:289816 up:source unirule:MF_00811 .
_:289817 up:source unirule:MF_00811 .
_:289818 up:source unirule:MF_00811 .
_:289819 up:source unirule:MF_00811 .
_:289820 up:source unirule:MF_00811 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005737 ,
GO:0008666 ,
GO:0009089 ,
GO:0019877 ,
keyword:12 ,
keyword:220 ,
keyword:28 ,
keyword:457 ,
keyword:677 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.3.1.117' ;
up:fullName '2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Tetrahydrodipicolinate N-succinyltransferase' ;
up:shortName 'THDP succinyltransferase' ,
'THP succinyltransferase' ,
'Tetrahydropicolinate succinylase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'dapD' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; LL-2,6-diaminopimelate from (S)-tetrahydrodipicolinate (succinylase route): step 1/3.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the transferase hexapeptide repeat family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf ?molecule15 .
?molecule15 rdfs:label 'substrate' .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf ?molecule23 .
?molecule23 rdfs:label 'substrate' .
_:289821 a rdf:Statement ;
up:attribution _:289800 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:289822 a rdf:Statement ;
up:attribution _:289801 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:289823 a rdf:Statement ;
up:attribution _:289802 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:289824 a rdf:Statement ;
up:attribution _:289803 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:289825 a rdf:Statement ;
up:attribution _:289804 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:289826 a rdf:Statement ;
up:attribution _:289805 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:289827 a rdf:Statement ;
up:attribution _:289806 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:289828 a rdf:Statement ;
up:attribution _:289807 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:289829 a rdf:Statement ;
up:attribution _:289808 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:289830 a rdf:Statement ;
up:attribution _:289809 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:289831 a rdf:Statement ;
up:attribution _:289810 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:289832 a rdf:Statement ;
up:attribution _:289811 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:220 .
_:289833 a rdf:Statement ;
up:attribution _:289812 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:457 .
_:289834 a rdf:Statement ;
up:attribution _:289813 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:677 .
_:289835 a rdf:Statement ;
up:attribution _:289814 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:289836 a rdf:Statement ;
up:attribution _:289815 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008666 .
_:289837 a rdf:Statement ;
up:attribution _:289816 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019877 .
_:289838 a rdf:Statement ;
up:attribution _:289817 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009089 .
_:289839 a rdf:Statement ;
up:attribution _:289818 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:289840 a rdf:Statement ;
up:source unirule:MF_00811 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:289841 a rdf:Statement ;
up:attribution _:289819 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:289842 a rdf:Statement ;
up:source unirule:MF_00811 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:289843 a rdf:Statement ;
up:attribution _:289820 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00811
#Rule MF_00811 Created by:? on:2005-06-30 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00811 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00811a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00811a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00811a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00811a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00811a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00811a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00811a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch30 faldo:location ?templateMotifSequenceMatchRegionP5622031 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5622033 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP56220MF_0081126 .
?templateMotifSequenceMatchRegionP5622031 faldo:begin ?templateMotifSequenceMatchBeginP5622032 .
?templateMotifSequenceMatchBeginP5622032 faldo:position ?templateMotifSequenceMatchBeginPositionP5622027 ;
faldo:reference isoform:P56220-1 .
?templateMotifSequenceProfileAlignmentOperationP5622033 edam:has_input signature:MF_00811 ;
rdf:type edam:operation_0300 .
?targetMotifMatch34 faldo:location ?targetMotifMatchRegionMatch35 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0081137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP56220MF_0081128 .
?targetMotifMatchRegionMatch35 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0081136 .
?targetMotifMatchRegionMatchBeginMF_0081136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0081129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0081137 edam:has_input signature:MF_00811 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56220MF_0081126, 1, (STRLEN(?templateMotifCigarP56220MF_0081126) - STRLEN(REPLACE(?templateMotifCigarP56220MF_0081126, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP5622027) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56220MF_0081128, 1, (STRLEN(?targetMotifMatchCigarP56220MF_0081128) - STRLEN(REPLACE(?targetMotifMatchCigarP56220MF_0081128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56220MF_0081128, 1, (STRLEN(?targetMotifMatchCigarP56220MF_0081128) - STRLEN(REPLACE(?targetMotifMatchCigarP56220MF_0081128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) .
BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0081129) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00811a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionP5622046 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5622048 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP56220MF_0081141 .
?templateMotifSequenceMatchRegionP5622046 faldo:begin ?templateMotifSequenceMatchBeginP5622047 .
?templateMotifSequenceMatchBeginP5622047 faldo:position ?templateMotifSequenceMatchBeginPositionP5622042 ;
faldo:reference isoform:P56220-1 .
?templateMotifSequenceProfileAlignmentOperationP5622048 edam:has_input signature:MF_00811 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0081152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP56220MF_0081143 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0081151 .
?targetMotifMatchRegionMatchBeginMF_0081151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0081144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0081152 edam:has_input signature:MF_00811 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56220MF_0081141, 1, (STRLEN(?templateMotifCigarP56220MF_0081141) - STRLEN(REPLACE(?templateMotifCigarP56220MF_0081141, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionP5622042) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56220MF_0081143, 1, (STRLEN(?targetMotifMatchCigarP56220MF_0081143) - STRLEN(REPLACE(?targetMotifMatchCigarP56220MF_0081143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56220MF_0081143, 1, (STRLEN(?targetMotifMatchCigarP56220MF_0081143) - STRLEN(REPLACE(?targetMotifMatchCigarP56220MF_0081143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0081144) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00811a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
}
"xsd:string |
