| http://purl.uniprot.org/unirules/MF_00820#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:292429 up:source unirule:MF_00820 .
_:292430 up:source unirule:MF_00820 .
_:292431 up:source unirule:MF_00820 .
_:292432 up:source unirule:MF_00820 .
_:292433 up:source unirule:MF_00820 .
_:292434 up:source unirule:MF_00820 .
_:292435 up:source unirule:MF_00820 .
_:292436 up:source unirule:MF_00820 .
_:292437 up:source unirule:MF_00820 .
_:292438 up:source unirule:MF_00820 .
_:292439 up:source unirule:MF_00820 .
_:292440 up:source unirule:MF_00820 .
_:292441 up:source unirule:MF_00820 .
_:292442 up:source unirule:MF_00820 .
_:292443 up:source unirule:MF_00820 .
_:292444 up:source unirule:MF_00820 .
_:292445 up:source unirule:MF_00820 .
_:292446 up:source unirule:MF_00820 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation11 ;
up:classifiedWith GO:0005737 ,
GO:0047559 ,
keyword:520 ,
keyword:560 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.130' ;
up:fullName '2,3-diketo-L-gulonate reductase' ;
up:shortName '2,3-DKG reductase' ;
rdf:type up:Structured_Name .
?name1 up:fullName '3-dehydro-L-gulonate 2-dehydrogenase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'dlgD' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reduction of 2,3-diketo-L-gulonate in the presence of NADH, to form 3-keto-L-gulonate.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation9 a up:Subcellular_Location_Annotation .
?annotation9li10 up:cellularComponent .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the LDH2/MDH2 oxidoreductase family. DlgD subfamily.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:57540 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:57540 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:57540 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
_:292447 a rdf:Statement ;
up:attribution _:292429 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:292448 a rdf:Statement ;
up:attribution _:292430 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:292449 a rdf:Statement ;
up:attribution _:292431 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:292450 a rdf:Statement ;
up:attribution _:292432 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:292451 a rdf:Statement ;
up:attribution _:292433 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:292452 a rdf:Statement ;
up:attribution _:292434 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:292453 a rdf:Statement ;
up:attribution _:292435 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:292454 a rdf:Statement ;
up:attribution _:292436 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:292455 a rdf:Statement ;
up:attribution _:292437 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:292456 a rdf:Statement ;
up:attribution _:292438 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:292457 a rdf:Statement ;
up:attribution _:292439 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:292458 a rdf:Statement ;
up:attribution _:292440 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:292459 a rdf:Statement ;
up:attribution _:292441 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0047559 .
_:292460 a rdf:Statement ;
up:attribution _:292442 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:292461 a rdf:Statement ;
up:source unirule:MF_00820 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:292462 a rdf:Statement ;
up:attribution _:292443 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:292463 a rdf:Statement ;
up:source unirule:MF_00820 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:292464 a rdf:Statement ;
up:attribution _:292444 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:292465 a rdf:Statement ;
up:source unirule:MF_00820 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:292466 a rdf:Statement ;
up:attribution _:292445 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:292467 a rdf:Statement ;
up:source unirule:MF_00820 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:292468 a rdf:Statement ;
up:attribution _:292446 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00820
#Rule MF_00820 Created by:? on:2005-11-29 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00820 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_00820a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00820a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00820a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00820a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00820a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00820a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00820a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00820a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch43 faldo:location ?templateMotifSequenceMatchRegionP3767244 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3767246 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37672MF_0082039 .
?templateMotifSequenceMatchRegionP3767244 faldo:begin ?templateMotifSequenceMatchBeginP3767245 .
?templateMotifSequenceMatchBeginP3767245 faldo:position ?templateMotifSequenceMatchBeginPositionP3767240 ;
faldo:reference isoform:P37672-1 .
?templateMotifSequenceProfileAlignmentOperationP3767246 edam:has_input signature:MF_00820 ;
rdf:type edam:operation_0300 .
?targetMotifMatch47 faldo:location ?targetMotifMatchRegionMatch48 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0082050 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37672MF_0082041 .
?targetMotifMatchRegionMatch48 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0082049 .
?targetMotifMatchRegionMatchBeginMF_0082049 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0082042 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0082050 edam:has_input signature:MF_00820 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37672MF_0082039, 1, (STRLEN(?templateMotifCigarP37672MF_0082039) - STRLEN(REPLACE(?templateMotifCigarP37672MF_0082039, CONCAT('^(?:-*[^-]){', STR(((168 - ?templateMotifSequenceMatchBeginPositionP3767240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37672MF_0082041, 1, (STRLEN(?targetMotifMatchCigarP37672MF_0082041) - STRLEN(REPLACE(?targetMotifMatchCigarP37672MF_0082041, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37672MF_0082041, 1, (STRLEN(?targetMotifMatchCigarP37672MF_0082041) - STRLEN(REPLACE(?targetMotifMatchCigarP37672MF_0082041, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0082042) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37672MF_0082039, 1, (STRLEN(?templateMotifCigarP37672MF_0082039) - STRLEN(REPLACE(?templateMotifCigarP37672MF_0082039, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP3767240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37672MF_0082041, 1, (STRLEN(?targetMotifMatchCigarP37672MF_0082041) - STRLEN(REPLACE(?targetMotifMatchCigarP37672MF_0082041, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37672MF_0082041, 1, (STRLEN(?targetMotifMatchCigarP37672MF_0082041) - STRLEN(REPLACE(?targetMotifMatchCigarP37672MF_0082041, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0082042) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]M[ARNDCQEGHILKMFPSTWYVBZJUOX]D[ARNDCQEGHILKMFPSTWYVBZJUOX]S', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00820a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionP3767261 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3767263 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37672MF_0082056 .
?templateMotifSequenceMatchRegionP3767261 faldo:begin ?templateMotifSequenceMatchBeginP3767262 .
?templateMotifSequenceMatchBeginP3767262 faldo:position ?templateMotifSequenceMatchBeginPositionP3767257 ;
faldo:reference isoform:P37672-1 .
?templateMotifSequenceProfileAlignmentOperationP3767263 edam:has_input signature:MF_00820 ;
rdf:type edam:operation_0300 .
?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0082067 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37672MF_0082058 .
?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0082066 .
?targetMotifMatchRegionMatchBeginMF_0082066 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0082059 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0082067 edam:has_input signature:MF_00820 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37672MF_0082056, 1, (STRLEN(?templateMotifCigarP37672MF_0082056) - STRLEN(REPLACE(?templateMotifCigarP37672MF_0082056, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionP3767257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37672MF_0082058, 1, (STRLEN(?targetMotifMatchCigarP37672MF_0082058) - STRLEN(REPLACE(?targetMotifMatchCigarP37672MF_0082058, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37672MF_0082058, 1, (STRLEN(?targetMotifMatchCigarP37672MF_0082058) - STRLEN(REPLACE(?targetMotifMatchCigarP37672MF_0082058, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0082059) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37672MF_0082056, 1, (STRLEN(?templateMotifCigarP37672MF_0082056) - STRLEN(REPLACE(?templateMotifCigarP37672MF_0082056, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionP3767257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37672MF_0082058, 1, (STRLEN(?targetMotifMatchCigarP37672MF_0082058) - STRLEN(REPLACE(?targetMotifMatchCigarP37672MF_0082058, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37672MF_0082058, 1, (STRLEN(?targetMotifMatchCigarP37672MF_0082058) - STRLEN(REPLACE(?targetMotifMatchCigarP37672MF_0082058, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0082059) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)) = 'WK')) .
BIND(URI(CONCAT(STR(?this), '#MF_00820a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionP3767278 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3767280 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37672MF_0082073 .
?templateMotifSequenceMatchRegionP3767278 faldo:begin ?templateMotifSequenceMatchBeginP3767279 .
?templateMotifSequenceMatchBeginP3767279 faldo:position ?templateMotifSequenceMatchBeginPositionP3767274 ;
faldo:reference isoform:P37672-1 .
?templateMotifSequenceProfileAlignmentOperationP3767280 edam:has_input signature:MF_00820 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0082084 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37672MF_0082075 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0082083 .
?targetMotifMatchRegionMatchBeginMF_0082083 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0082076 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0082084 edam:has_input signature:MF_00820 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37672MF_0082073, 1, (STRLEN(?templateMotifCigarP37672MF_0082073) - STRLEN(REPLACE(?templateMotifCigarP37672MF_0082073, CONCAT('^(?:-*[^-]){', STR(((304 - ?templateMotifSequenceMatchBeginPositionP3767274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37672MF_0082075, 1, (STRLEN(?targetMotifMatchCigarP37672MF_0082075) - STRLEN(REPLACE(?targetMotifMatchCigarP37672MF_0082075, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37672MF_0082075, 1, (STRLEN(?targetMotifMatchCigarP37672MF_0082075) - STRLEN(REPLACE(?targetMotifMatchCigarP37672MF_0082075, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0082076) - 1) AS ?thisPositionOn31) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37672MF_0082073, 1, (STRLEN(?templateMotifCigarP37672MF_0082073) - STRLEN(REPLACE(?templateMotifCigarP37672MF_0082073, CONCAT('^(?:-*[^-]){', STR(((306 - ?templateMotifSequenceMatchBeginPositionP3767274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37672MF_0082075, 1, (STRLEN(?targetMotifMatchCigarP37672MF_0082075) - STRLEN(REPLACE(?targetMotifMatchCigarP37672MF_0082075, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37672MF_0082075, 1, (STRLEN(?targetMotifMatchCigarP37672MF_0082075) - STRLEN(REPLACE(?targetMotifMatchCigarP37672MF_0082075, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0082076) - 1) AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]E', SUBSTR(?thisSequenceValue, ?thisPositionOn31, (?thisPositionOn32 - ?thisPositionOn31)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00820a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionP3767295 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3767297 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37672MF_0082090 .
?templateMotifSequenceMatchRegionP3767295 faldo:begin ?templateMotifSequenceMatchBeginP3767296 .
?templateMotifSequenceMatchBeginP3767296 faldo:position ?templateMotifSequenceMatchBeginPositionP3767291 ;
faldo:reference isoform:P37672-1 .
?templateMotifSequenceProfileAlignmentOperationP3767297 edam:has_input signature:MF_00820 ;
rdf:type edam:operation_0300 .
?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00820101 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37672MF_0082092 .
?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00820100 .
?targetMotifMatchRegionMatchBeginMF_00820100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0082093 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00820101 edam:has_input signature:MF_00820 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37672MF_0082090, 1, (STRLEN(?templateMotifCigarP37672MF_0082090) - STRLEN(REPLACE(?templateMotifCigarP37672MF_0082090, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP3767291) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37672MF_0082092, 1, (STRLEN(?targetMotifMatchCigarP37672MF_0082092) - STRLEN(REPLACE(?targetMotifMatchCigarP37672MF_0082092, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37672MF_0082092, 1, (STRLEN(?targetMotifMatchCigarP37672MF_0082092) - STRLEN(REPLACE(?targetMotifMatchCigarP37672MF_0082092, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0082093) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00820a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
}
"xsd:string |
