| http://purl.uniprot.org/unirules/MF_00853#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00853#construct-template-42 |
| http://purl.uniprot.org/unirules/MF_00853#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00853#construct-template-66 |
| http://purl.uniprot.org/unirules/MF_00853#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00853#construct-template-82 |
| http://purl.uniprot.org/unirules/MF_00853#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00853#construct-template-81 |
| http://purl.uniprot.org/unirules/MF_00853#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00853#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00853#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00853#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00853#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00853#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:304827 up:source unirule:MF_00853 .
_:304828 up:source unirule:MF_00853 .
_:304829 up:source unirule:MF_00853 .
_:304830 up:source unirule:MF_00853 .
_:304831 up:source unirule:MF_00853 .
_:304832 up:source unirule:MF_00853 .
_:304833 up:source unirule:MF_00853 .
_:304834 up:source unirule:MF_00853 .
_:304835 up:source unirule:MF_00853 .
_:304836 up:source unirule:MF_00853 .
_:304837 up:source unirule:MF_00853 .
_:304838 up:source unirule:MF_00853 .
_:304839 up:source unirule:MF_00853 .
_:304840 up:source unirule:MF_00853 .
_:304841 up:source unirule:MF_00853 .
_:304842 up:source unirule:MF_00853 .
_:304843 up:source unirule:MF_00853 .
_:304844 up:source unirule:MF_00853 .
_:304845 up:source unirule:MF_00853 .
_:304846 up:source unirule:MF_00853 .
_:304847 up:source unirule:MF_00853 .
_:304848 up:source unirule:MF_00853 .
_:304849 up:source unirule:MF_00853 .
_:304850 up:source unirule:MF_00853 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation10 ,
?annotation12 ,
?annotation13 ,
?annotation14 ;
up:classifiedWith GO:0005886 ,
GO:0006782 ,
GO:0006783 ,
GO:0010181 ,
GO:0070819 ,
keyword:285 ,
keyword:288 ,
keyword:547 ,
keyword:560 ,
keyword:627 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.3.5.3' ;
up:fullName 'Protoporphyrinogen IX dehydrogenase [quinone]' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Protoporphyrinogen IX dehydrogenase [menaquinone]' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Protoporphyrinogen IX dehydrogenase [ubiquinone]' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Protoporphyrinogen oxidase' ;
up:shortName 'PPO' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'hemG' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the 6-electron oxidation of protoporphyrinogen IX to form protoporphyrin IX; under anaerobic conditions uses menaquinone as an electron acceptor, under aerobic conditions uses ubiquinone as an electron acceptor.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:activity ?activity9 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity9 up:catalyticActivity ;
up:enzymeClass .
?annotation10 up:activity ?activity11 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity11 up:catalyticActivity .
?annotation12 up:cofactor chebi:58210 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 FMN non-covalently per subunit.' .
?annotation13 a up:Pathway_Annotation ;
rdfs:comment 'Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; protoporphyrin-IX from protoporphyrinogen-IX: step 1/1.' .
?annotation14 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the HemG family.' .
?case15 up:classifiedWith keyword:997 .
?case17 up:classifiedWith keyword:1003 .
_:304851 a rdf:Statement ;
up:attribution _:304827 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:304852 a rdf:Statement ;
up:attribution _:304828 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:304853 a rdf:Statement ;
up:attribution _:304829 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:304854 a rdf:Statement ;
up:attribution _:304830 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:304855 a rdf:Statement ;
up:attribution _:304831 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:304856 a rdf:Statement ;
up:attribution _:304832 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:304857 a rdf:Statement ;
up:attribution _:304833 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:304858 a rdf:Statement ;
up:attribution _:304834 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:304859 a rdf:Statement ;
up:attribution _:304835 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:304860 a rdf:Statement ;
up:attribution _:304836 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:304861 a rdf:Statement ;
up:attribution _:304837 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:304862 a rdf:Statement ;
up:attribution _:304838 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:304863 a rdf:Statement ;
up:attribution _:304839 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:288 .
_:304864 a rdf:Statement ;
up:attribution _:304840 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:304865 a rdf:Statement ;
up:attribution _:304841 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:304866 a rdf:Statement ;
up:attribution _:304842 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:304867 a rdf:Statement ;
up:attribution _:304843 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:627 .
_:304868 a rdf:Statement ;
up:attribution _:304844 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006782 .
_:304869 a rdf:Statement ;
up:attribution _:304845 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070819 .
_:304870 a rdf:Statement ;
up:attribution _:304846 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010181 .
_:304871 a rdf:Statement ;
up:attribution _:304847 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006783 .
_:304872 a rdf:Statement ;
up:attribution _:304848 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:304873 a rdf:Statement ;
up:attribution _:304849 ;
rdf:subject ?case15 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:304874 a rdf:Statement ;
up:attribution _:304850 ;
rdf:subject ?case17 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00853
#Rule MF_00853 Created by:? on:2020-05-12 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00853 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00853a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00853a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00853a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00853a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_00853a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00853a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00853a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00853a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_00853a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_00853a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_00853a14')) AS ?annotation14) .
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p18 .
?p18 skos:narrower .
}
BIND(?this AS ?case15) .
}
OPTIONAL {
?this a up:Protein .
{
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p19 .
?p19 skos:narrower .
}
})) .
} UNION {
{
?this up:proteome .
} UNION {
?this up:proteome ?p20 .
?p20 skos:narrower .
}
}
BIND(?this AS ?case16) .
}
OPTIONAL {
?this a up:Protein .
{
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p21 .
?p21 skos:narrower .
}
})) .
} UNION {
{
?this up:proteome .
} UNION {
?this up:proteome ?p22 .
?p22 skos:narrower .
}
}
BIND(?this AS ?case17) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_00853 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00853#construct |
