| http://purl.uniprot.org/unirules/MF_00926#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:322632 up:source unirule:MF_00926 .
_:322633 up:source unirule:MF_00926 .
_:322634 up:source unirule:MF_00926 .
_:322635 up:source unirule:MF_00926 .
_:322636 up:source unirule:MF_00926 .
_:322637 up:source unirule:MF_00926 .
_:322638 up:source unirule:MF_00926 .
_:322639 up:source unirule:MF_00926 .
_:322640 up:source unirule:MF_00926 .
_:322641 up:source unirule:MF_00926 .
_:322642 up:source unirule:MF_00926 .
_:322643 up:source unirule:MF_00926 .
_:322644 up:source unirule:MF_00926 .
_:322645 up:source unirule:MF_00926 .
_:322646 up:source unirule:MF_00926 .
_:322647 up:source unirule:MF_00926 .
_:322648 up:source unirule:MF_00926 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0005737 ,
GO:0008270 ,
GO:0010468 ,
keyword:479 ,
keyword:862 ,
keyword:863 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'RNA polymerase-binding transcription factor DksA' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'dksA' .
?annotation2 a up:Subunit_Annotation ;
rdfs:comment 'Interacts directly with the RNA polymerase.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DksA family.' .
?pfs8 up:annotation ?annotation9 ,
?annotation15 ,
?annotation21 ,
?annotation27 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:29105 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:29105 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:29105 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:29105 .
?sam33 up:classifiedWith keyword:175 .
?coiledCoil34 faldo:begin ?coiledCoilb35 ;
faldo:end ?coiledCoile36 .
?coiledCoilb35 faldo:position ?coiledCoilbp37 .
?coiledCoile36 faldo:position ?coiledCoilep38 .
?keyword39 up:range ?coiledCoil34 .
_:322649 a rdf:Statement ;
up:attribution _:322632 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:322650 a rdf:Statement ;
up:attribution _:322633 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:322651 a rdf:Statement ;
up:attribution _:322634 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:322652 a rdf:Statement ;
up:attribution _:322635 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:322653 a rdf:Statement ;
up:attribution _:322636 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:322654 a rdf:Statement ;
up:attribution _:322637 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:322655 a rdf:Statement ;
up:attribution _:322638 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:322656 a rdf:Statement ;
up:attribution _:322639 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:322657 a rdf:Statement ;
up:attribution _:322640 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:863 .
_:322658 a rdf:Statement ;
up:attribution _:322641 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:322659 a rdf:Statement ;
up:attribution _:322642 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010468 .
_:322660 a rdf:Statement ;
up:attribution _:322643 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:322661 a rdf:Statement ;
up:source unirule:MF_00926 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:322662 a rdf:Statement ;
up:attribution _:322644 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:322663 a rdf:Statement ;
up:source unirule:MF_00926 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:322664 a rdf:Statement ;
up:attribution _:322645 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:322665 a rdf:Statement ;
up:source unirule:MF_00926 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:322666 a rdf:Statement ;
up:attribution _:322646 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:322667 a rdf:Statement ;
up:source unirule:MF_00926 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:322668 a rdf:Statement ;
up:attribution _:322647 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:322669 a rdf:Statement ;
up:attribution _:322648 ;
rdf:subject ?sam33 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00926
#Rule MF_00926 Created by:? on:2012-10-09 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00926 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00926a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00926a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00926a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00926a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionP0ABS145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABS147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABS1MF_0092640 .
?templateMotifSequenceMatchRegionP0ABS145 faldo:begin ?templateMotifSequenceMatchBeginP0ABS146 .
?templateMotifSequenceMatchBeginP0ABS146 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABS141 ;
faldo:reference isoform:P0ABS1-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABS147 edam:has_input signature:MF_00926 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0092651 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABS1MF_0092642 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0092650 .
?targetMotifMatchRegionMatchBeginMF_0092650 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0092643 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0092651 edam:has_input signature:MF_00926 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABS1MF_0092640, 1, (STRLEN(?templateMotifCigarP0ABS1MF_0092640) - STRLEN(REPLACE(?templateMotifCigarP0ABS1MF_0092640, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionP0ABS141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABS1MF_0092642, 1, (STRLEN(?targetMotifMatchCigarP0ABS1MF_0092642) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABS1MF_0092642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABS1MF_0092642, 1, (STRLEN(?targetMotifMatchCigarP0ABS1MF_0092642) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABS1MF_0092642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0092643) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABS1MF_0092640, 1, (STRLEN(?templateMotifCigarP0ABS1MF_0092640) - STRLEN(REPLACE(?templateMotifCigarP0ABS1MF_0092640, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionP0ABS141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABS1MF_0092642, 1, (STRLEN(?targetMotifMatchCigarP0ABS1MF_0092642) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABS1MF_0092642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABS1MF_0092642, 1, (STRLEN(?targetMotifMatchCigarP0ABS1MF_0092642) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABS1MF_0092642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0092643) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABS1MF_0092640, 1, (STRLEN(?templateMotifCigarP0ABS1MF_0092640) - STRLEN(REPLACE(?templateMotifCigarP0ABS1MF_0092640, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionP0ABS141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABS1MF_0092642, 1, (STRLEN(?targetMotifMatchCigarP0ABS1MF_0092642) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABS1MF_0092642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABS1MF_0092642, 1, (STRLEN(?targetMotifMatchCigarP0ABS1MF_0092642) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABS1MF_0092642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0092643) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABS1MF_0092640, 1, (STRLEN(?templateMotifCigarP0ABS1MF_0092640) - STRLEN(REPLACE(?templateMotifCigarP0ABS1MF_0092640, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionP0ABS141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABS1MF_0092642, 1, (STRLEN(?targetMotifMatchCigarP0ABS1MF_0092642) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABS1MF_0092642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABS1MF_0092642, 1, (STRLEN(?targetMotifMatchCigarP0ABS1MF_0092642) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABS1MF_0092642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) .
BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0092643) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1236 .
})) .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this up:annotation ?samcc64 ;
up:sequence ?thisSequence .
?samcc64 up:range ?samccr65 ;
rdf:type up:Coiled_Coil_Annotation .
?samccr65 faldo:begin ?samccb66 ;
faldo:end ?samcce67 .
?samccb66 faldo:position ?samccbp68 ;
faldo:reference ?thisSequence .
?samcce67 faldo:position ?samccep69 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam33) .
}
BIND(URI(CONCAT(STR(?this), '#MF_00926a39')) AS ?keyword39) .
}
"xsd:string |
