| http://purl.uniprot.org/unirules/MF_00961#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:334664 up:source unirule:MF_00961 .
_:334665 up:source unirule:MF_00961 .
_:334666 up:source unirule:MF_00961 .
_:334667 up:source unirule:MF_00961 .
_:334668 up:source unirule:MF_00961 .
_:334669 up:source unirule:MF_00961 .
_:334670 up:source unirule:MF_00961 .
_:334671 up:source unirule:MF_00961 .
_:334672 up:source unirule:MF_00961 .
_:334673 up:source unirule:MF_00961 .
_:334674 up:source unirule:MF_00961 .
_:334675 up:source unirule:MF_00961 .
_:334676 up:source unirule:MF_00961 .
_:334677 up:source unirule:MF_00961 .
_:334678 up:source unirule:MF_00961 .
_:334679 up:source unirule:MF_00961 .
_:334680 up:source unirule:MF_00961 .
_:334681 up:source unirule:MF_00961 .
_:334682 up:source unirule:MF_00961 .
_:334683 up:source unirule:MF_00961 .
_:334684 up:source unirule:MF_00961 .
_:334685 up:source unirule:MF_00961 .
_:334686 up:source unirule:MF_00961 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0003677 ,
GO:0005737 ,
GO:0006352 ,
GO:0009408 ,
GO:0010468 ,
GO:0016987 ,
keyword:238 ,
keyword:346 ,
keyword:731 ,
keyword:804 ,
keyword:805 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'RNA polymerase sigma factor RpoH' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'RNA polymerase sigma-32 factor' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'rpoH' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Interacts with the RNA polymerase core enzyme.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the sigma-70 factor family. RpoH subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Nucleotide_Binding_Annotation ;
rdfs:comment 'H-T-H motif' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Sigma-70 factor domain-2' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Sigma-70 factor domain-4' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Interaction with polymerase core subunit RpoC' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
_:334687 a rdf:Statement ;
up:attribution _:334664 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:334688 a rdf:Statement ;
up:attribution _:334665 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:334689 a rdf:Statement ;
up:attribution _:334666 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:334690 a rdf:Statement ;
up:attribution _:334667 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:334691 a rdf:Statement ;
up:attribution _:334668 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:334692 a rdf:Statement ;
up:attribution _:334669 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:334693 a rdf:Statement ;
up:attribution _:334670 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:334694 a rdf:Statement ;
up:attribution _:334671 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:334695 a rdf:Statement ;
up:attribution _:334672 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:334696 a rdf:Statement ;
up:attribution _:334673 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:731 .
_:334697 a rdf:Statement ;
up:attribution _:334674 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:346 .
_:334698 a rdf:Statement ;
up:attribution _:334675 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:334699 a rdf:Statement ;
up:attribution _:334676 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:805 .
_:334700 a rdf:Statement ;
up:attribution _:334677 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:334701 a rdf:Statement ;
up:attribution _:334678 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016987 .
_:334702 a rdf:Statement ;
up:attribution _:334679 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010468 .
_:334703 a rdf:Statement ;
up:attribution _:334680 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009408 .
_:334704 a rdf:Statement ;
up:attribution _:334681 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006352 .
_:334705 a rdf:Statement ;
up:attribution _:334682 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:334706 a rdf:Statement ;
up:source unirule:MF_00961 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:334707 a rdf:Statement ;
up:attribution _:334683 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:334708 a rdf:Statement ;
up:source unirule:MF_00961 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:334709 a rdf:Statement ;
up:attribution _:334684 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:334710 a rdf:Statement ;
up:source unirule:MF_00961 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:334711 a rdf:Statement ;
up:attribution _:334685 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:334712 a rdf:Statement ;
up:source unirule:MF_00961 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:334713 a rdf:Statement ;
up:attribution _:334686 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00961
#Rule MF_00961 Created by:? on:2013-05-22 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00961 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_00961a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00961a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00961a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00961a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00961a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00961a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch36 faldo:location ?templateMotifSequenceMatchRegionP0AGB337 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGB339 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGB3MF_0096132 .
?templateMotifSequenceMatchRegionP0AGB337 faldo:begin ?templateMotifSequenceMatchBeginP0AGB338 .
?templateMotifSequenceMatchBeginP0AGB338 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGB333 ;
faldo:reference isoform:P0AGB3-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGB339 edam:has_input signature:MF_00961 ;
rdf:type edam:operation_0300 .
?targetMotifMatch40 faldo:location ?targetMotifMatchRegionMatch41 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0096143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGB3MF_0096134 .
?targetMotifMatchRegionMatch41 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0096142 .
?targetMotifMatchRegionMatchBeginMF_0096142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0096135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0096143 edam:has_input signature:MF_00961 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGB3MF_0096132, 1, (STRLEN(?templateMotifCigarP0AGB3MF_0096132) - STRLEN(REPLACE(?templateMotifCigarP0AGB3MF_0096132, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionP0AGB333) + 1)), '}'), '')))), '[a-z]', '')) AS ?step144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGB3MF_0096134, 1, (STRLEN(?targetMotifMatchCigarP0AGB3MF_0096134) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGB3MF_0096134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGB3MF_0096134, 1, (STRLEN(?targetMotifMatchCigarP0AGB3MF_0096134) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGB3MF_0096134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), '')))), '[^-]', ''))) AS ?step245) .
BIND(((?step245 + ?targetMotifMatchRegionMatchBeginPositionMF_0096135) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGB3MF_0096132, 1, (STRLEN(?templateMotifCigarP0AGB3MF_0096132) - STRLEN(REPLACE(?templateMotifCigarP0AGB3MF_0096132, CONCAT('^(?:-*[^-]){', STR(((272 - ?templateMotifSequenceMatchBeginPositionP0AGB333) + 1)), '}'), '')))), '[a-z]', '')) AS ?step146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGB3MF_0096134, 1, (STRLEN(?targetMotifMatchCigarP0AGB3MF_0096134) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGB3MF_0096134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGB3MF_0096134, 1, (STRLEN(?targetMotifMatchCigarP0AGB3MF_0096134) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGB3MF_0096134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), '')))), '[^-]', ''))) AS ?step247) .
BIND(((?step247 + ?targetMotifMatchRegionMatchBeginPositionMF_0096135) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((BOUND(?thisPositionOn12) && BOUND(?thisPositionOn13))) .
BIND(URI(CONCAT(STR(?this), '#MF_00961a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch53 faldo:location ?templateMotifSequenceMatchRegionP0AGB354 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGB356 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGB3MF_0096149 .
?templateMotifSequenceMatchRegionP0AGB354 faldo:begin ?templateMotifSequenceMatchBeginP0AGB355 .
?templateMotifSequenceMatchBeginP0AGB355 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGB350 ;
faldo:reference isoform:P0AGB3-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGB356 edam:has_input signature:MF_00961 ;
rdf:type edam:operation_0300 .
?targetMotifMatch57 faldo:location ?targetMotifMatchRegionMatch58 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0096160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGB3MF_0096151 .
?targetMotifMatchRegionMatch58 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0096159 .
?targetMotifMatchRegionMatchBeginMF_0096159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0096152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0096160 edam:has_input signature:MF_00961 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGB3MF_0096149, 1, (STRLEN(?templateMotifCigarP0AGB3MF_0096149) - STRLEN(REPLACE(?templateMotifCigarP0AGB3MF_0096149, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionP0AGB350) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGB3MF_0096151, 1, (STRLEN(?targetMotifMatchCigarP0AGB3MF_0096151) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGB3MF_0096151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGB3MF_0096151, 1, (STRLEN(?targetMotifMatchCigarP0AGB3MF_0096151) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGB3MF_0096151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) .
BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0096152) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGB3MF_0096149, 1, (STRLEN(?templateMotifCigarP0AGB3MF_0096149) - STRLEN(REPLACE(?templateMotifCigarP0AGB3MF_0096149, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionP0AGB350) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGB3MF_0096151, 1, (STRLEN(?targetMotifMatchCigarP0AGB3MF_0096151) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGB3MF_0096151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGB3MF_0096151, 1, (STRLEN(?targetMotifMatchCigarP0AGB3MF_0096151) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGB3MF_0096151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0096152) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) .
BIND(URI(CONCAT(STR(?this), '#MF_00961a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionP0AGB371 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGB373 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGB3MF_0096166 .
?templateMotifSequenceMatchRegionP0AGB371 faldo:begin ?templateMotifSequenceMatchBeginP0AGB372 .
?templateMotifSequenceMatchBeginP0AGB372 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGB367 ;
faldo:reference isoform:P0AGB3-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGB373 edam:has_input signature:MF_00961 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0096177 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGB3MF_0096168 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0096176 .
?targetMotifMatchRegionMatchBeginMF_0096176 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0096169 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0096177 edam:has_input signature:MF_00961 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGB3MF_0096166, 1, (STRLEN(?templateMotifCigarP0AGB3MF_0096166) - STRLEN(REPLACE(?templateMotifCigarP0AGB3MF_0096166, CONCAT('^(?:-*[^-]){', STR(((228 - ?templateMotifSequenceMatchBeginPositionP0AGB367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGB3MF_0096168, 1, (STRLEN(?targetMotifMatchCigarP0AGB3MF_0096168) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGB3MF_0096168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGB3MF_0096168, 1, (STRLEN(?targetMotifMatchCigarP0AGB3MF_0096168) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGB3MF_0096168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0096169) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGB3MF_0096166, 1, (STRLEN(?templateMotifCigarP0AGB3MF_0096166) - STRLEN(REPLACE(?templateMotifCigarP0AGB3MF_0096166, CONCAT('^(?:-*[^-]){', STR(((280 - ?templateMotifSequenceMatchBeginPositionP0AGB367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGB3MF_0096168, 1, (STRLEN(?targetMotifMatchCigarP0AGB3MF_0096168) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGB3MF_0096168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGB3MF_0096168, 1, (STRLEN(?targetMotifMatchCigarP0AGB3MF_0096168) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGB3MF_0096168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0096169) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(URI(CONCAT(STR(?this), '#MF_00961a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP0AGB388 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGB390 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGB3MF_0096183 .
?templateMotifSequenceMatchRegionP0AGB388 faldo:begin ?templateMotifSequenceMatchBeginP0AGB389 .
?templateMotifSequenceMatchBeginP0AGB389 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGB384 ;
faldo:reference isoform:P0AGB3-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGB390 edam:has_input signature:MF_00961 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0096194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGB3MF_0096185 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0096193 .
?targetMotifMatchRegionMatchBeginMF_0096193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0096186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0096194 edam:has_input signature:MF_00961 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGB3MF_0096183, 1, (STRLEN(?templateMotifCigarP0AGB3MF_0096183) - STRLEN(REPLACE(?templateMotifCigarP0AGB3MF_0096183, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP0AGB384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGB3MF_0096185, 1, (STRLEN(?targetMotifMatchCigarP0AGB3MF_0096185) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGB3MF_0096185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGB3MF_0096185, 1, (STRLEN(?targetMotifMatchCigarP0AGB3MF_0096185) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGB3MF_0096185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0096186) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGB3MF_0096183, 1, (STRLEN(?templateMotifCigarP0AGB3MF_0096183) - STRLEN(REPLACE(?templateMotifCigarP0AGB3MF_0096183, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP0AGB384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGB3MF_0096185, 1, (STRLEN(?targetMotifMatchCigarP0AGB3MF_0096185) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGB3MF_0096185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGB3MF_0096185, 1, (STRLEN(?targetMotifMatchCigarP0AGB3MF_0096185) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGB3MF_0096185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0096186) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER (REGEX('[DE][LVIM][IVM][QSA]', SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00961a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
}
"xsd:string |
