| http://purl.uniprot.org/unirules/MF_00972#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:338976 up:source unirule:MF_00972 .
_:338977 up:source unirule:MF_00972 .
_:338978 up:source unirule:MF_00972 .
_:338979 up:source unirule:MF_00972 .
_:338980 up:source unirule:MF_00972 .
_:338981 up:source unirule:MF_00972 .
_:338982 up:source unirule:MF_00972 .
_:338983 up:source unirule:MF_00972 .
_:338984 up:source unirule:MF_00972 .
_:338985 up:source unirule:MF_00972 .
_:338986 up:source unirule:MF_00972 .
_:338987 up:source unirule:MF_00972 .
_:338988 up:source unirule:MF_00972 .
_:338989 up:source unirule:MF_00972 .
_:338990 up:source unirule:MF_00972 .
_:338991 up:source unirule:MF_00972 .
_:338992 up:source unirule:MF_00972 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0002100 ,
GO:0052717 ,
keyword:378 ,
keyword:819 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.4.33' ;
up:fullName 'tRNA-specific adenosine deaminase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'tadA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the cytidine and deoxycytidylate deaminase family.' .
?case7 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs8 up:annotation ?annotation9 ,
?annotation15 ,
?annotation21 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:29105 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:29105 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:29105 .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
_:338993 a rdf:Statement ;
up:attribution _:338976 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:338994 a rdf:Statement ;
up:attribution _:338977 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:338995 a rdf:Statement ;
up:attribution _:338978 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:338996 a rdf:Statement ;
up:attribution _:338979 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:338997 a rdf:Statement ;
up:attribution _:338980 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:338998 a rdf:Statement ;
up:attribution _:338981 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:338999 a rdf:Statement ;
up:attribution _:338982 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:339000 a rdf:Statement ;
up:attribution _:338983 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:339001 a rdf:Statement ;
up:attribution _:338984 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0052717 .
_:339002 a rdf:Statement ;
up:attribution _:338985 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002100 .
_:339003 a rdf:Statement ;
up:attribution _:338986 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:339004 a rdf:Statement ;
up:attribution _:338987 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:339005 a rdf:Statement ;
up:attribution _:338988 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:339006 a rdf:Statement ;
up:source unirule:MF_00972 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:339007 a rdf:Statement ;
up:attribution _:338989 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:339008 a rdf:Statement ;
up:source unirule:MF_00972 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:339009 a rdf:Statement ;
up:attribution _:338990 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:339010 a rdf:Statement ;
up:source unirule:MF_00972 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:339011 a rdf:Statement ;
up:attribution _:338991 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:339012 a rdf:Statement ;
up:source unirule:MF_00972 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:339013 a rdf:Statement ;
up:attribution _:338992 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00972
#Rule MF_00972 Created by:? on:2013-08-20 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00972 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00972a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00972a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00972a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00972a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00972a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch37 faldo:location ?templateMotifSequenceMatchRegionP6839838 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6839840 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68398MF_0097233 .
?templateMotifSequenceMatchRegionP6839838 faldo:begin ?templateMotifSequenceMatchBeginP6839839 .
?templateMotifSequenceMatchBeginP6839839 faldo:position ?templateMotifSequenceMatchBeginPositionP6839834 ;
faldo:reference isoform:P68398-1 .
?templateMotifSequenceProfileAlignmentOperationP6839840 edam:has_input signature:MF_00972 ;
rdf:type edam:operation_0300 .
?targetMotifMatch41 faldo:location ?targetMotifMatchRegionMatch42 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0097244 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68398MF_0097235 .
?targetMotifMatchRegionMatch42 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0097243 .
?targetMotifMatchRegionMatchBeginMF_0097243 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0097236 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0097244 edam:has_input signature:MF_00972 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68398MF_0097233, 1, (STRLEN(?templateMotifCigarP68398MF_0097233) - STRLEN(REPLACE(?templateMotifCigarP68398MF_0097233, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionP6839834) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68398MF_0097235, 1, (STRLEN(?targetMotifMatchCigarP68398MF_0097235) - STRLEN(REPLACE(?targetMotifMatchCigarP68398MF_0097235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68398MF_0097235, 1, (STRLEN(?targetMotifMatchCigarP68398MF_0097235) - STRLEN(REPLACE(?targetMotifMatchCigarP68398MF_0097235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0097236) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68398MF_0097233, 1, (STRLEN(?templateMotifCigarP68398MF_0097233) - STRLEN(REPLACE(?templateMotifCigarP68398MF_0097233, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionP6839834) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68398MF_0097235, 1, (STRLEN(?targetMotifMatchCigarP68398MF_0097235) - STRLEN(REPLACE(?targetMotifMatchCigarP68398MF_0097235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68398MF_0097235, 1, (STRLEN(?targetMotifMatchCigarP68398MF_0097235) - STRLEN(REPLACE(?targetMotifMatchCigarP68398MF_0097235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0097236) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68398MF_0097233, 1, (STRLEN(?templateMotifCigarP68398MF_0097233) - STRLEN(REPLACE(?templateMotifCigarP68398MF_0097233, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionP6839834) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68398MF_0097235, 1, (STRLEN(?targetMotifMatchCigarP68398MF_0097235) - STRLEN(REPLACE(?targetMotifMatchCigarP68398MF_0097235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68398MF_0097235, 1, (STRLEN(?targetMotifMatchCigarP68398MF_0097235) - STRLEN(REPLACE(?targetMotifMatchCigarP68398MF_0097235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0097236) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch58 faldo:location ?templateMotifSequenceMatchRegionP6839859 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6839861 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68398MF_0097254 .
?templateMotifSequenceMatchRegionP6839859 faldo:begin ?templateMotifSequenceMatchBeginP6839860 .
?templateMotifSequenceMatchBeginP6839860 faldo:position ?templateMotifSequenceMatchBeginPositionP6839855 ;
faldo:reference isoform:P68398-1 .
?templateMotifSequenceProfileAlignmentOperationP6839861 edam:has_input signature:MF_00972 ;
rdf:type edam:operation_0300 .
?targetMotifMatch62 faldo:location ?targetMotifMatchRegionMatch63 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0097265 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68398MF_0097256 .
?targetMotifMatchRegionMatch63 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0097264 .
?targetMotifMatchRegionMatchBeginMF_0097264 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0097257 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0097265 edam:has_input signature:MF_00972 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68398MF_0097254, 1, (STRLEN(?templateMotifCigarP68398MF_0097254) - STRLEN(REPLACE(?templateMotifCigarP68398MF_0097254, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP6839855) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68398MF_0097256, 1, (STRLEN(?targetMotifMatchCigarP68398MF_0097256) - STRLEN(REPLACE(?targetMotifMatchCigarP68398MF_0097256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68398MF_0097256, 1, (STRLEN(?targetMotifMatchCigarP68398MF_0097256) - STRLEN(REPLACE(?targetMotifMatchCigarP68398MF_0097256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0097257) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs2t68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00972a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag69) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag69, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
