| http://purl.uniprot.org/unirules/MF_00975#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:339814 up:source unirule:MF_00975 .
_:339815 up:source unirule:MF_00975 .
_:339816 up:source unirule:MF_00975 .
_:339817 up:source unirule:MF_00975 .
_:339818 up:source unirule:MF_00975 .
_:339819 up:source unirule:MF_00975 .
_:339820 up:source unirule:MF_00975 .
_:339821 up:source unirule:MF_00975 .
_:339822 up:source unirule:MF_00975 .
_:339823 up:source unirule:MF_00975 .
_:339824 up:source unirule:MF_00975 .
_:339825 up:source unirule:MF_00975 .
_:339826 up:source unirule:MF_00975 .
_:339827 up:source unirule:MF_00975 .
_:339828 up:source unirule:MF_00975 .
_:339829 up:source unirule:MF_00975 .
_:339830 up:source unirule:MF_00975 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0005737 ,
GO:0006401 ,
keyword:271 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Exosome complex component Csl4' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'csl4' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Component of the archaeal exosome complex. Forms a trimer of Rrp4 and/or Csl4 subunits. The trimer associates with an hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 heterodimers. Interacts with DnaG.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the CSL4 family.' .
?case7 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs8 up:annotation ?annotation9 ,
?annotation15 ,
?annotation21 ,
?annotation27 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:29105 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:29105 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:29105 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:29105 .
_:339831 a rdf:Statement ;
up:attribution _:339814 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:339832 a rdf:Statement ;
up:attribution _:339815 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:339833 a rdf:Statement ;
up:attribution _:339816 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:339834 a rdf:Statement ;
up:attribution _:339817 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:339835 a rdf:Statement ;
up:attribution _:339818 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:339836 a rdf:Statement ;
up:attribution _:339819 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:339837 a rdf:Statement ;
up:attribution _:339820 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:339838 a rdf:Statement ;
up:attribution _:339821 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:271 .
_:339839 a rdf:Statement ;
up:attribution _:339822 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006401 .
_:339840 a rdf:Statement ;
up:attribution _:339823 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:339841 a rdf:Statement ;
up:attribution _:339824 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:339842 a rdf:Statement ;
up:attribution _:339825 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:339843 a rdf:Statement ;
up:attribution _:339826 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:339844 a rdf:Statement ;
up:source unirule:MF_00975 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:339845 a rdf:Statement ;
up:attribution _:339827 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:339846 a rdf:Statement ;
up:source unirule:MF_00975 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:339847 a rdf:Statement ;
up:attribution _:339828 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:339848 a rdf:Statement ;
up:source unirule:MF_00975 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:339849 a rdf:Statement ;
up:attribution _:339829 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:339850 a rdf:Statement ;
up:source unirule:MF_00975 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:339851 a rdf:Statement ;
up:attribution _:339830 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00975
#Rule MF_00975 Created by:? on:2013-10-24 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00975 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00975a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00975a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00975a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00975a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00975a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch37 faldo:location ?templateMotifSequenceMatchRegionO3003338 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3003340 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO30033MF_0097533 .
?templateMotifSequenceMatchRegionO3003338 faldo:begin ?templateMotifSequenceMatchBeginO3003339 .
?templateMotifSequenceMatchBeginO3003339 faldo:position ?templateMotifSequenceMatchBeginPositionO3003334 ;
faldo:reference isoform:O30033-1 .
?templateMotifSequenceProfileAlignmentOperationO3003340 edam:has_input signature:MF_00975 ;
rdf:type edam:operation_0300 .
?targetMotifMatch41 faldo:location ?targetMotifMatchRegionMatch42 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0097544 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO30033MF_0097535 .
?targetMotifMatchRegionMatch42 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0097543 .
?targetMotifMatchRegionMatchBeginMF_0097543 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0097536 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0097544 edam:has_input signature:MF_00975 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30033MF_0097533, 1, (STRLEN(?templateMotifCigarO30033MF_0097533) - STRLEN(REPLACE(?templateMotifCigarO30033MF_0097533, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionO3003334) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30033MF_0097535, 1, (STRLEN(?targetMotifMatchCigarO30033MF_0097535) - STRLEN(REPLACE(?targetMotifMatchCigarO30033MF_0097535, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30033MF_0097535, 1, (STRLEN(?targetMotifMatchCigarO30033MF_0097535) - STRLEN(REPLACE(?targetMotifMatchCigarO30033MF_0097535, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0097536) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30033MF_0097533, 1, (STRLEN(?templateMotifCigarO30033MF_0097533) - STRLEN(REPLACE(?templateMotifCigarO30033MF_0097533, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionO3003334) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30033MF_0097535, 1, (STRLEN(?targetMotifMatchCigarO30033MF_0097535) - STRLEN(REPLACE(?targetMotifMatchCigarO30033MF_0097535, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30033MF_0097535, 1, (STRLEN(?targetMotifMatchCigarO30033MF_0097535) - STRLEN(REPLACE(?targetMotifMatchCigarO30033MF_0097535, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0097536) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30033MF_0097533, 1, (STRLEN(?templateMotifCigarO30033MF_0097533) - STRLEN(REPLACE(?templateMotifCigarO30033MF_0097533, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionO3003334) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30033MF_0097535, 1, (STRLEN(?targetMotifMatchCigarO30033MF_0097535) - STRLEN(REPLACE(?targetMotifMatchCigarO30033MF_0097535, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30033MF_0097535, 1, (STRLEN(?targetMotifMatchCigarO30033MF_0097535) - STRLEN(REPLACE(?targetMotifMatchCigarO30033MF_0097535, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0097536) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30033MF_0097533, 1, (STRLEN(?templateMotifCigarO30033MF_0097533) - STRLEN(REPLACE(?templateMotifCigarO30033MF_0097533, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionO3003334) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30033MF_0097535, 1, (STRLEN(?targetMotifMatchCigarO30033MF_0097535) - STRLEN(REPLACE(?targetMotifMatchCigarO30033MF_0097535, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30033MF_0097535, 1, (STRLEN(?targetMotifMatchCigarO30033MF_0097535) - STRLEN(REPLACE(?targetMotifMatchCigarO30033MF_0097535, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0097536) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag57) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag57, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
