| http://purl.uniprot.org/unirules/MF_00980#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00980#construct-template-94 |
| http://purl.uniprot.org/unirules/MF_00980#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00980#construct-template-84 |
| http://purl.uniprot.org/unirules/MF_00980#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00980#construct-template-60 |
| http://purl.uniprot.org/unirules/MF_00980#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00980#construct-template-100 |
| http://purl.uniprot.org/unirules/MF_00980#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00980#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_00980#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00980#construct-template-86 |
| http://purl.uniprot.org/unirules/MF_00980#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00980#construct-template-7 |
| http://purl.uniprot.org/unirules/MF_00980#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00980#construct-template-88 |
| http://purl.uniprot.org/unirules/MF_00980#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00980#construct-template-111 |
| http://purl.uniprot.org/unirules/MF_00980#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00980#construct-template-96 |
| http://purl.uniprot.org/unirules/MF_00980#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00980#construct-template-98 |
| http://purl.uniprot.org/unirules/MF_00980#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00980#construct-template-95 |
| http://purl.uniprot.org/unirules/MF_00980#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00980#construct-template-93 |
| http://purl.uniprot.org/unirules/MF_00980#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00980#construct-template-110 |
| http://purl.uniprot.org/unirules/MF_00980#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00980#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00980#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00980#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00980#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00980#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:341875 up:source unirule:MF_00980 .
_:341876 up:source unirule:MF_00980 .
_:341877 up:source unirule:MF_00980 .
_:341878 up:source unirule:MF_00980 .
_:341879 up:source unirule:MF_00980 .
_:341880 up:source unirule:MF_00980 .
_:341881 up:source unirule:MF_00980 .
_:341882 up:source unirule:MF_00980 .
_:341883 up:source unirule:MF_00980 .
_:341884 up:source unirule:MF_00980 .
_:341885 up:source unirule:MF_00980 .
_:341886 up:source unirule:MF_00980 .
_:341887 up:source unirule:MF_00980 .
_:341888 up:source unirule:MF_00980 .
_:341889 up:source unirule:MF_00980 .
_:341890 up:source unirule:MF_00980 .
_:341891 up:source unirule:MF_00980 .
_:341892 up:source unirule:MF_00980 .
_:341893 up:source unirule:MF_00980 .
_:341894 up:source unirule:MF_00980 .
_:341895 up:source unirule:MF_00980 .
_:341896 up:source unirule:MF_00980 .
_:341897 up:source unirule:MF_00980 .
_:341898 up:source unirule:MF_00980 .
_:341899 up:source unirule:MF_00980 .
_:341900 up:source unirule:MF_00980 .
_:341901 up:source unirule:MF_00980 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0000160 ,
GO:0005524 ,
GO:0005886 ,
GO:0016774 ,
keyword:1003 ,
keyword:1133 ,
keyword:418 ,
keyword:472 ,
keyword:547 ,
keyword:597 ,
keyword:67 ,
keyword:808 ,
keyword:812 ,
keyword:902 ,
keyword:997 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.2.-' ;
up:fullName 'Phosphotransferase RcsD' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Phosphotransfer intermediate RcsD' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'rcsD' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Interacts with RcsC and RcsB.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:PTM_Annotation ;
rdfs:comment 'Phosphorylated by RcsC.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the RcsD family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphohistidine' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?sam15 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane16 faldo:begin ?transmembraneb17 ;
faldo:end ?transmembranee18 .
?transmembraneb17 faldo:position ?transmembranebp19 .
?transmembranee18 faldo:position ?transmembraneep20 .
?keyword21 up:range ?transmembrane16 .
?keyword22 up:range ?transmembrane16 .
?keyword23 up:range ?transmembrane16 .
_:341902 a rdf:Statement ;
up:attribution _:341875 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:341903 a rdf:Statement ;
up:attribution _:341876 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:341904 a rdf:Statement ;
up:attribution _:341877 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:341905 a rdf:Statement ;
up:attribution _:341878 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:341906 a rdf:Statement ;
up:attribution _:341879 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:341907 a rdf:Statement ;
up:attribution _:341880 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:341908 a rdf:Statement ;
up:attribution _:341881 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:341909 a rdf:Statement ;
up:attribution _:341882 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:341910 a rdf:Statement ;
up:attribution _:341883 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:341911 a rdf:Statement ;
up:attribution _:341884 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:341912 a rdf:Statement ;
up:attribution _:341885 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:341913 a rdf:Statement ;
up:attribution _:341886 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:341914 a rdf:Statement ;
up:attribution _:341887 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:341915 a rdf:Statement ;
up:attribution _:341888 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:341916 a rdf:Statement ;
up:attribution _:341889 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:341917 a rdf:Statement ;
up:attribution _:341890 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:341918 a rdf:Statement ;
up:attribution _:341891 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:341919 a rdf:Statement ;
up:attribution _:341892 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:341920 a rdf:Statement ;
up:attribution _:341893 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:902 .
_:341921 a rdf:Statement ;
up:attribution _:341894 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:341922 a rdf:Statement ;
up:attribution _:341895 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016774 .
_:341923 a rdf:Statement ;
up:attribution _:341896 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000160 .
_:341924 a rdf:Statement ;
up:attribution _:341897 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:341925 a rdf:Statement ;
up:source unirule:MF_00980 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:341926 a rdf:Statement ;
up:attribution _:341898 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:341927 a rdf:Statement ;
up:attribution _:341899 ;
rdf:subject ?sam15 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:341928 a rdf:Statement ;
up:attribution _:341900 ;
rdf:subject ?sam15 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:341929 a rdf:Statement ;
up:attribution _:341901 ;
rdf:subject ?sam15 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00980
#Rule MF_00980 Created by:? on:2013-12-12 Modified by:Edouard de Castro on:2022-09-29
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00980 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_00980a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00980a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00980a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00980a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00980a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00980a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00980a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch28 faldo:location ?templateMotifSequenceMatchRegionP3983829 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3983831 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39838MF_0098024 .
?templateMotifSequenceMatchRegionP3983829 faldo:begin ?templateMotifSequenceMatchBeginP3983830 .
?templateMotifSequenceMatchBeginP3983830 faldo:position ?templateMotifSequenceMatchBeginPositionP3983825 ;
faldo:reference isoform:P39838-1 .
?templateMotifSequenceProfileAlignmentOperationP3983831 edam:has_input signature:MF_00980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch32 faldo:location ?targetMotifMatchRegionMatch33 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0098035 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39838MF_0098026 .
?targetMotifMatchRegionMatch33 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0098034 .
?targetMotifMatchRegionMatchBeginMF_0098034 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0098027 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0098035 edam:has_input signature:MF_00980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39838MF_0098024, 1, (STRLEN(?templateMotifCigarP39838MF_0098024) - STRLEN(REPLACE(?templateMotifCigarP39838MF_0098024, CONCAT('^(?:-*[^-]){', STR(((842 - ?templateMotifSequenceMatchBeginPositionP3983825) + 1)), '}'), '')))), '[a-z]', '')) AS ?step136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39838MF_0098026, 1, (STRLEN(?targetMotifMatchCigarP39838MF_0098026) - STRLEN(REPLACE(?targetMotifMatchCigarP39838MF_0098026, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39838MF_0098026, 1, (STRLEN(?targetMotifMatchCigarP39838MF_0098026) - STRLEN(REPLACE(?targetMotifMatchCigarP39838MF_0098026, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step136), '}'), '')))), '[^-]', ''))) AS ?step237) .
BIND(((?step237 + ?targetMotifMatchRegionMatchBeginPositionMF_0098027) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00980a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane39 ;
up:sequence ?thisSequence .
?samtransmembrane39 up:range ?samtransmembraner40 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner40 faldo:begin ?samtransmembraneb41 ;
faldo:end ?samtransmembranee42 .
?samtransmembraneb41 faldo:position ?samtransmembranebp43 ;
faldo:reference ?thisSequence .
?samtransmembranee42 faldo:position ?samtransmembraneep44 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam15) .
}
BIND(URI(CONCAT(STR(?this), '#MF_00980a21')) AS ?keyword21) .
BIND(URI(CONCAT(STR(?this), '#MF_00980a22')) AS ?keyword22) .
BIND(URI(CONCAT(STR(?this), '#MF_00980a23')) AS ?keyword23) .
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_00980 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00980#construct |
