| http://purl.uniprot.org/unirules/MF_00992#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:346509 up:source unirule:MF_00992 .
_:346510 up:source unirule:MF_00992 .
_:346511 up:source unirule:MF_00992 .
_:346512 up:source unirule:MF_00992 .
_:346513 up:source unirule:MF_00992 .
_:346514 up:source unirule:MF_00992 .
_:346515 up:source unirule:MF_00992 .
_:346516 up:source unirule:MF_00992 .
_:346517 up:source unirule:MF_00992 .
_:346518 up:source unirule:MF_00992 .
_:346519 up:source unirule:MF_00992 .
_:346520 up:source unirule:MF_00992 .
_:346521 up:source unirule:MF_00992 .
_:346522 up:source unirule:MF_00992 .
_:346523 up:source unirule:MF_00992 .
_:346524 up:source unirule:MF_00992 .
_:346525 up:source unirule:MF_00992 .
_:346526 up:source unirule:MF_00992 .
_:346527 up:source unirule:MF_00992 .
_:346528 up:source unirule:MF_00992 .
_:346529 up:source unirule:MF_00992 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0009234 ,
GO:0046992 ,
keyword:474 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.21.98.1' ;
up:fullName 'Cyclic dehypoxanthine futalosine synthase' ;
up:shortName 'Cyclic DHFL synthase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Dehypoxanthine futalosine cyclase' ;
up:shortName 'DHFL cyclase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Menaquinone biosynthetic enzyme MqnC' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'mqnC' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2).' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Quinol/quinone metabolism; menaquinone biosynthesis.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the radical SAM superfamily. MqnC family.' .
?case9 up:classifiedWith GO:0005506 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 ,
keyword:949 .
?pfs10 up:annotation ?annotation11 ,
?annotation17 ,
?annotation23 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:49883 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:49883 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:49883 .
_:346530 a rdf:Statement ;
up:attribution _:346509 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:346531 a rdf:Statement ;
up:attribution _:346510 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:346532 a rdf:Statement ;
up:attribution _:346511 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:346533 a rdf:Statement ;
up:attribution _:346512 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:346534 a rdf:Statement ;
up:attribution _:346513 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:346535 a rdf:Statement ;
up:attribution _:346514 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:346536 a rdf:Statement ;
up:attribution _:346515 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:346537 a rdf:Statement ;
up:attribution _:346516 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:346538 a rdf:Statement ;
up:attribution _:346517 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:474 .
_:346539 a rdf:Statement ;
up:attribution _:346518 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:346540 a rdf:Statement ;
up:attribution _:346519 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046992 .
_:346541 a rdf:Statement ;
up:attribution _:346520 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009234 .
_:346542 a rdf:Statement ;
up:attribution _:346521 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:346543 a rdf:Statement ;
up:attribution _:346522 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:346544 a rdf:Statement ;
up:attribution _:346523 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:346545 a rdf:Statement ;
up:attribution _:346524 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:346546 a rdf:Statement ;
up:attribution _:346525 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:346547 a rdf:Statement ;
up:attribution _:346526 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:346548 a rdf:Statement ;
up:source unirule:MF_00992 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:346549 a rdf:Statement ;
up:attribution _:346527 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:346550 a rdf:Statement ;
up:source unirule:MF_00992 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:346551 a rdf:Statement ;
up:attribution _:346528 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:346552 a rdf:Statement ;
up:source unirule:MF_00992 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:346553 a rdf:Statement ;
up:attribution _:346529 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00992
#Rule MF_00992 Created by:? on:2014-02-14 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon29 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00992 .
?thisOrganism rdfs:subClassOf+ ?supertaxon29 .
BIND(URI(CONCAT(STR(?this), '#MF_00992a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00992a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00992a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00992a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00992a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00992a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00992a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch34 faldo:location ?templateMotifSequenceMatchRegionQ9K86435 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9K86437 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9K864MF_0099230 .
?templateMotifSequenceMatchRegionQ9K86435 faldo:begin ?templateMotifSequenceMatchBeginQ9K86436 .
?templateMotifSequenceMatchBeginQ9K86436 faldo:position ?templateMotifSequenceMatchBeginPositionQ9K86431 ;
faldo:reference isoform:Q9K864-1 .
?templateMotifSequenceProfileAlignmentOperationQ9K86437 edam:has_input signature:MF_00992 ;
rdf:type edam:operation_0300 .
?targetMotifMatch38 faldo:location ?targetMotifMatchRegionMatch39 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0099241 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9K864MF_0099232 .
?targetMotifMatchRegionMatch39 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0099240 .
?targetMotifMatchRegionMatchBeginMF_0099240 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0099233 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0099241 edam:has_input signature:MF_00992 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9K864MF_0099230, 1, (STRLEN(?templateMotifCigarQ9K864MF_0099230) - STRLEN(REPLACE(?templateMotifCigarQ9K864MF_0099230, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionQ9K86431) + 1)), '}'), '')))), '[a-z]', '')) AS ?step142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9K864MF_0099232, 1, (STRLEN(?targetMotifMatchCigarQ9K864MF_0099232) - STRLEN(REPLACE(?targetMotifMatchCigarQ9K864MF_0099232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9K864MF_0099232, 1, (STRLEN(?targetMotifMatchCigarQ9K864MF_0099232) - STRLEN(REPLACE(?targetMotifMatchCigarQ9K864MF_0099232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), '')))), '[^-]', ''))) AS ?step243) .
BIND(((?step243 + ?targetMotifMatchRegionMatchBeginPositionMF_0099233) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9K864MF_0099230, 1, (STRLEN(?templateMotifCigarQ9K864MF_0099230) - STRLEN(REPLACE(?templateMotifCigarQ9K864MF_0099230, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionQ9K86431) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9K864MF_0099232, 1, (STRLEN(?targetMotifMatchCigarQ9K864MF_0099232) - STRLEN(REPLACE(?targetMotifMatchCigarQ9K864MF_0099232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9K864MF_0099232, 1, (STRLEN(?targetMotifMatchCigarQ9K864MF_0099232) - STRLEN(REPLACE(?targetMotifMatchCigarQ9K864MF_0099232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0099233) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9K864MF_0099230, 1, (STRLEN(?templateMotifCigarQ9K864MF_0099230) - STRLEN(REPLACE(?templateMotifCigarQ9K864MF_0099230, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionQ9K86431) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9K864MF_0099232, 1, (STRLEN(?targetMotifMatchCigarQ9K864MF_0099232) - STRLEN(REPLACE(?targetMotifMatchCigarQ9K864MF_0099232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9K864MF_0099232, 1, (STRLEN(?targetMotifMatchCigarQ9K864MF_0099232) - STRLEN(REPLACE(?targetMotifMatchCigarQ9K864MF_0099232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0099233) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'C')) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag51) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag51, ?UNBOUND_VARIABLE) AS ?case9) .
}
"xsd:string |
