| http://purl.uniprot.org/unirules/MF_01013#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:354357 up:source unirule:MF_01013 .
_:354358 up:source unirule:MF_01013 .
_:354359 up:source unirule:MF_01013 .
_:354360 up:source unirule:MF_01013 .
_:354361 up:source unirule:MF_01013 .
_:354362 up:source unirule:MF_01013 .
_:354363 up:source unirule:MF_01013 .
_:354364 up:source unirule:MF_01013 .
_:354365 up:source unirule:MF_01013 .
_:354366 up:source unirule:MF_01013 .
_:354367 up:source unirule:MF_01013 .
_:354368 up:source unirule:MF_01013 .
_:354369 up:source unirule:MF_01013 .
_:354370 up:source unirule:MF_01013 .
_:354371 up:source unirule:MF_01013 .
_:354372 up:source unirule:MF_01013 .
_:354373 up:source unirule:MF_01013 .
_:354374 up:source unirule:MF_01013 .
_:354375 up:source unirule:MF_01013 .
_:354376 up:source unirule:MF_01013 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation12 ;
up:classifiedWith GO:0000105 ,
GO:0000107 ,
GO:0005737 ,
keyword:28 ,
keyword:368 ,
keyword:456 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.3.2.10' ;
up:fullName 'Imidazole glycerol phosphate synthase subunit HisF' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'IGP synthase cyclase subunit' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'IGP synthase subunit HisF' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'ImGP synthase subunit HisF' ;
up:shortName 'IGPS subunit HisF' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'hisF' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 5/9.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Heterodimer of HisH and HisF.' .
?annotation10 a up:Subcellular_Location_Annotation .
?annotation10li11 up:cellularComponent .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the HisA/HisF family.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
_:354377 a rdf:Statement ;
up:attribution _:354357 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:354378 a rdf:Statement ;
up:attribution _:354358 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:354379 a rdf:Statement ;
up:attribution _:354359 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:354380 a rdf:Statement ;
up:attribution _:354360 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:354381 a rdf:Statement ;
up:attribution _:354361 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:354382 a rdf:Statement ;
up:attribution _:354362 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:354383 a rdf:Statement ;
up:attribution _:354363 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:354384 a rdf:Statement ;
up:attribution _:354364 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:354385 a rdf:Statement ;
up:attribution _:354365 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:354386 a rdf:Statement ;
up:attribution _:354366 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:354387 a rdf:Statement ;
up:attribution _:354367 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:354388 a rdf:Statement ;
up:attribution _:354368 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:354389 a rdf:Statement ;
up:attribution _:354369 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:354390 a rdf:Statement ;
up:attribution _:354370 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:368 .
_:354391 a rdf:Statement ;
up:attribution _:354371 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:354392 a rdf:Statement ;
up:attribution _:354372 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000107 .
_:354393 a rdf:Statement ;
up:attribution _:354373 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000105 .
_:354394 a rdf:Statement ;
up:attribution _:354374 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:354395 a rdf:Statement ;
up:source unirule:MF_01013 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:354396 a rdf:Statement ;
up:attribution _:354375 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:354397 a rdf:Statement ;
up:source unirule:MF_01013 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:354398 a rdf:Statement ;
up:attribution _:354376 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01013
#Rule MF_01013 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon25 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01013 .
?thisOrganism rdfs:subClassOf+ ?supertaxon25 .
BIND(URI(CONCAT(STR(?this), '#MF_01013a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01013a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01013a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01013a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01013a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01013a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01013a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01013a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01013a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01013a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch30 faldo:location ?templateMotifSequenceMatchRegionQ9X0C631 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X0C633 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X0C6MF_0101326 .
?templateMotifSequenceMatchRegionQ9X0C631 faldo:begin ?templateMotifSequenceMatchBeginQ9X0C632 .
?templateMotifSequenceMatchBeginQ9X0C632 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X0C627 ;
faldo:reference isoform:Q9X0C6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X0C633 edam:has_input signature:MF_01013 ;
rdf:type edam:operation_0300 .
?targetMotifMatch34 faldo:location ?targetMotifMatchRegionMatch35 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0101337 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X0C6MF_0101328 .
?targetMotifMatchRegionMatch35 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0101336 .
?targetMotifMatchRegionMatchBeginMF_0101336 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0101329 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0101337 edam:has_input signature:MF_01013 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X0C6MF_0101326, 1, (STRLEN(?templateMotifCigarQ9X0C6MF_0101326) - STRLEN(REPLACE(?templateMotifCigarQ9X0C6MF_0101326, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionQ9X0C627) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X0C6MF_0101328, 1, (STRLEN(?targetMotifMatchCigarQ9X0C6MF_0101328) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X0C6MF_0101328, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X0C6MF_0101328, 1, (STRLEN(?targetMotifMatchCigarQ9X0C6MF_0101328) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X0C6MF_0101328, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) .
BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0101329) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01013a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionQ9X0C646 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X0C648 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X0C6MF_0101341 .
?templateMotifSequenceMatchRegionQ9X0C646 faldo:begin ?templateMotifSequenceMatchBeginQ9X0C647 .
?templateMotifSequenceMatchBeginQ9X0C647 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X0C642 ;
faldo:reference isoform:Q9X0C6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X0C648 edam:has_input signature:MF_01013 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0101352 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X0C6MF_0101343 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0101351 .
?targetMotifMatchRegionMatchBeginMF_0101351 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0101344 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0101352 edam:has_input signature:MF_01013 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X0C6MF_0101341, 1, (STRLEN(?templateMotifCigarQ9X0C6MF_0101341) - STRLEN(REPLACE(?templateMotifCigarQ9X0C6MF_0101341, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionQ9X0C642) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X0C6MF_0101343, 1, (STRLEN(?targetMotifMatchCigarQ9X0C6MF_0101343) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X0C6MF_0101343, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X0C6MF_0101343, 1, (STRLEN(?targetMotifMatchCigarQ9X0C6MF_0101343) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X0C6MF_0101343, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0101344) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01013a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
}
"xsd:string |
