| http://purl.uniprot.org/unirules/MF_01050#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:369058 up:source unirule:MF_01050 .
_:369059 up:source unirule:MF_01050 .
_:369060 up:source unirule:MF_01050 .
_:369061 up:source unirule:MF_01050 .
_:369062 up:source unirule:MF_01050 .
_:369063 up:source unirule:MF_01050 .
_:369064 up:source unirule:MF_01050 .
_:369065 up:source unirule:MF_01050 .
_:369066 up:source unirule:MF_01050 .
_:369067 up:source unirule:MF_01050 .
_:369068 up:source unirule:MF_01050 .
_:369069 up:source unirule:MF_01050 .
_:369070 up:source unirule:MF_01050 .
_:369071 up:source unirule:MF_01050 .
_:369072 up:source unirule:MF_01050 .
_:369073 up:source unirule:MF_01050 .
_:369074 up:source unirule:MF_01050 .
_:369075 up:source unirule:MF_01050 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation12 ;
up:classifiedWith GO:0005737 ,
GO:0008410 ,
GO:0009437 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.8.3.21' ;
up:fullName 'L-carnitine CoA-transferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Crotonobetainyl-CoA:carnitine CoA-transferase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'caiB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA to L-carnitine to generate L-carnitinyl-CoA and gamma-butyrobetaine. Is also able to catalyze the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine to generate crotonobetainyl-CoA.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Amine and polyamine metabolism; carnitine metabolism.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation10 a up:Subcellular_Location_Annotation .
?annotation10li11 up:cellularComponent .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the CoA-transferase III family. CaiB subfamily.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:57287 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:57287 .
_:369076 a rdf:Statement ;
up:attribution _:369058 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:369077 a rdf:Statement ;
up:attribution _:369059 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:369078 a rdf:Statement ;
up:attribution _:369060 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:369079 a rdf:Statement ;
up:attribution _:369061 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:369080 a rdf:Statement ;
up:attribution _:369062 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:369081 a rdf:Statement ;
up:attribution _:369063 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:369082 a rdf:Statement ;
up:attribution _:369064 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:369083 a rdf:Statement ;
up:attribution _:369065 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:369084 a rdf:Statement ;
up:attribution _:369066 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:369085 a rdf:Statement ;
up:attribution _:369067 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:369086 a rdf:Statement ;
up:attribution _:369068 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:369087 a rdf:Statement ;
up:attribution _:369069 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:369088 a rdf:Statement ;
up:attribution _:369070 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008410 .
_:369089 a rdf:Statement ;
up:attribution _:369071 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009437 .
_:369090 a rdf:Statement ;
up:attribution _:369072 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:369091 a rdf:Statement ;
up:source unirule:MF_01050 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:369092 a rdf:Statement ;
up:attribution _:369073 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:369093 a rdf:Statement ;
up:source unirule:MF_01050 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:369094 a rdf:Statement ;
up:attribution _:369074 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:369095 a rdf:Statement ;
up:source unirule:MF_01050 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:369096 a rdf:Statement ;
up:attribution _:369075 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01050
#Rule MF_01050 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01050 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01050a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01050a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01050a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01050a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01050a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01050a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01050a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01050a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01050a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch37 faldo:location ?templateMotifSequenceMatchRegionP3157238 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3157240 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31572MF_0105033 .
?templateMotifSequenceMatchRegionP3157238 faldo:begin ?templateMotifSequenceMatchBeginP3157239 .
?templateMotifSequenceMatchBeginP3157239 faldo:position ?templateMotifSequenceMatchBeginPositionP3157234 ;
faldo:reference isoform:P31572-1 .
?templateMotifSequenceProfileAlignmentOperationP3157240 edam:has_input signature:MF_01050 ;
rdf:type edam:operation_0300 .
?targetMotifMatch41 faldo:location ?targetMotifMatchRegionMatch42 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0105044 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31572MF_0105035 .
?targetMotifMatchRegionMatch42 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0105043 .
?targetMotifMatchRegionMatchBeginMF_0105043 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0105036 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0105044 edam:has_input signature:MF_01050 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31572MF_0105033, 1, (STRLEN(?templateMotifCigarP31572MF_0105033) - STRLEN(REPLACE(?templateMotifCigarP31572MF_0105033, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionP3157234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31572MF_0105035, 1, (STRLEN(?targetMotifMatchCigarP31572MF_0105035) - STRLEN(REPLACE(?targetMotifMatchCigarP31572MF_0105035, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31572MF_0105035, 1, (STRLEN(?targetMotifMatchCigarP31572MF_0105035) - STRLEN(REPLACE(?targetMotifMatchCigarP31572MF_0105035, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0105036) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01050a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch52 faldo:location ?templateMotifSequenceMatchRegionP3157253 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3157255 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31572MF_0105048 .
?templateMotifSequenceMatchRegionP3157253 faldo:begin ?templateMotifSequenceMatchBeginP3157254 .
?templateMotifSequenceMatchBeginP3157254 faldo:position ?templateMotifSequenceMatchBeginPositionP3157249 ;
faldo:reference isoform:P31572-1 .
?templateMotifSequenceProfileAlignmentOperationP3157255 edam:has_input signature:MF_01050 ;
rdf:type edam:operation_0300 .
?targetMotifMatch56 faldo:location ?targetMotifMatchRegionMatch57 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0105059 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31572MF_0105050 .
?targetMotifMatchRegionMatch57 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0105058 .
?targetMotifMatchRegionMatchBeginMF_0105058 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0105051 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0105059 edam:has_input signature:MF_01050 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31572MF_0105048, 1, (STRLEN(?templateMotifCigarP31572MF_0105048) - STRLEN(REPLACE(?templateMotifCigarP31572MF_0105048, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionP3157249) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31572MF_0105050, 1, (STRLEN(?targetMotifMatchCigarP31572MF_0105050) - STRLEN(REPLACE(?targetMotifMatchCigarP31572MF_0105050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31572MF_0105050, 1, (STRLEN(?targetMotifMatchCigarP31572MF_0105050) - STRLEN(REPLACE(?targetMotifMatchCigarP31572MF_0105050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0105051) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01050a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionP3157268 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3157270 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31572MF_0105063 .
?templateMotifSequenceMatchRegionP3157268 faldo:begin ?templateMotifSequenceMatchBeginP3157269 .
?templateMotifSequenceMatchBeginP3157269 faldo:position ?templateMotifSequenceMatchBeginPositionP3157264 ;
faldo:reference isoform:P31572-1 .
?templateMotifSequenceProfileAlignmentOperationP3157270 edam:has_input signature:MF_01050 ;
rdf:type edam:operation_0300 .
?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0105074 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31572MF_0105065 .
?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0105073 .
?targetMotifMatchRegionMatchBeginMF_0105073 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0105066 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0105074 edam:has_input signature:MF_01050 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31572MF_0105063, 1, (STRLEN(?templateMotifCigarP31572MF_0105063) - STRLEN(REPLACE(?templateMotifCigarP31572MF_0105063, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP3157264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31572MF_0105065, 1, (STRLEN(?targetMotifMatchCigarP31572MF_0105065) - STRLEN(REPLACE(?targetMotifMatchCigarP31572MF_0105065, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31572MF_0105065, 1, (STRLEN(?targetMotifMatchCigarP31572MF_0105065) - STRLEN(REPLACE(?targetMotifMatchCigarP31572MF_0105065, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0105066) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01050a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
}
"xsd:string |
