| http://purl.uniprot.org/unirules/MF_01083#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:377165 up:source unirule:MF_01083 .
_:377166 up:source unirule:MF_01083 .
_:377167 up:source unirule:MF_01083 .
_:377168 up:source unirule:MF_01083 .
_:377169 up:source unirule:MF_01083 .
_:377170 up:source unirule:MF_01083 .
_:377171 up:source unirule:MF_01083 .
_:377172 up:source unirule:MF_01083 .
_:377173 up:source unirule:MF_01083 .
_:377174 up:source unirule:MF_01083 .
_:377175 up:source unirule:MF_01083 .
_:377176 up:source unirule:MF_01083 .
_:377177 up:source unirule:MF_01083 .
_:377178 up:source unirule:MF_01083 .
_:377179 up:source unirule:MF_01083 .
_:377180 up:source unirule:MF_01083 .
_:377181 up:source unirule:MF_01083 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0019477 ,
GO:0050498 ,
keyword:223 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.14.11.64' ;
up:fullName 'Glutarate 2-hydroxylase' ;
up:shortName 'G-2-H' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'glaH' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Acts as an alpha-ketoglutarate-dependent dioxygenase catalyzing hydroxylation of glutarate (GA) to L-2-hydroxyglutarate (L2HG). Functions in a L-lysine degradation pathway that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid degradation.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the glutarate hydroxylase family.' .
?case8 up:classifiedWith GO:0008198 ,
keyword:408 ,
keyword:479 .
?pfs9 up:annotation ?annotation10 ,
?annotation16 ,
?annotation22 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:24875 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:24875 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:24875 .
_:377182 a rdf:Statement ;
up:attribution _:377165 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:377183 a rdf:Statement ;
up:attribution _:377166 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:377184 a rdf:Statement ;
up:attribution _:377167 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:377185 a rdf:Statement ;
up:attribution _:377168 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:377186 a rdf:Statement ;
up:attribution _:377169 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:377187 a rdf:Statement ;
up:attribution _:377170 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:377188 a rdf:Statement ;
up:attribution _:377171 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:377189 a rdf:Statement ;
up:attribution _:377172 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:223 .
_:377190 a rdf:Statement ;
up:attribution _:377173 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:377191 a rdf:Statement ;
up:attribution _:377174 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050498 .
_:377192 a rdf:Statement ;
up:attribution _:377175 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019477 .
_:377193 a rdf:Statement ;
up:attribution _:377176 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:377194 a rdf:Statement ;
up:attribution _:377177 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:377195 a rdf:Statement ;
up:attribution _:377178 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008198 .
_:377196 a rdf:Statement ;
up:source unirule:MF_01083 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:377197 a rdf:Statement ;
up:attribution _:377179 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:377198 a rdf:Statement ;
up:source unirule:MF_01083 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:377199 a rdf:Statement ;
up:attribution _:377180 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:377200 a rdf:Statement ;
up:source unirule:MF_01083 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:377201 a rdf:Statement ;
up:attribution _:377181 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01083
#Rule MF_01083 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon28 {taxon:91347 taxon:135621}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01083 .
?thisOrganism rdfs:subClassOf+ ?supertaxon28 .
BIND(URI(CONCAT(STR(?this), '#MF_01083a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01083a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01083a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01083a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01083a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01083a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch33 faldo:location ?templateMotifSequenceMatchRegionP7662134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7662136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76621MF_0108329 .
?templateMotifSequenceMatchRegionP7662134 faldo:begin ?templateMotifSequenceMatchBeginP7662135 .
?templateMotifSequenceMatchBeginP7662135 faldo:position ?templateMotifSequenceMatchBeginPositionP7662130 ;
faldo:reference isoform:P76621-1 .
?templateMotifSequenceProfileAlignmentOperationP7662136 edam:has_input signature:MF_01083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch37 faldo:location ?targetMotifMatchRegionMatch38 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0108340 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76621MF_0108331 .
?targetMotifMatchRegionMatch38 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0108339 .
?targetMotifMatchRegionMatchBeginMF_0108339 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0108332 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0108340 edam:has_input signature:MF_01083 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76621MF_0108329, 1, (STRLEN(?templateMotifCigarP76621MF_0108329) - STRLEN(REPLACE(?templateMotifCigarP76621MF_0108329, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionP7662130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76621MF_0108331, 1, (STRLEN(?targetMotifMatchCigarP76621MF_0108331) - STRLEN(REPLACE(?targetMotifMatchCigarP76621MF_0108331, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76621MF_0108331, 1, (STRLEN(?targetMotifMatchCigarP76621MF_0108331) - STRLEN(REPLACE(?targetMotifMatchCigarP76621MF_0108331, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), '')))), '[^-]', ''))) AS ?step242) .
BIND(((?step242 + ?targetMotifMatchRegionMatchBeginPositionMF_0108332) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76621MF_0108329, 1, (STRLEN(?templateMotifCigarP76621MF_0108329) - STRLEN(REPLACE(?templateMotifCigarP76621MF_0108329, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP7662130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76621MF_0108331, 1, (STRLEN(?targetMotifMatchCigarP76621MF_0108331) - STRLEN(REPLACE(?targetMotifMatchCigarP76621MF_0108331, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76621MF_0108331, 1, (STRLEN(?targetMotifMatchCigarP76621MF_0108331) - STRLEN(REPLACE(?targetMotifMatchCigarP76621MF_0108331, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), '')))), '[^-]', ''))) AS ?step245) .
BIND(((?step245 + ?targetMotifMatchRegionMatchBeginPositionMF_0108332) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76621MF_0108329, 1, (STRLEN(?templateMotifCigarP76621MF_0108329) - STRLEN(REPLACE(?templateMotifCigarP76621MF_0108329, CONCAT('^(?:-*[^-]){', STR(((292 - ?templateMotifSequenceMatchBeginPositionP7662130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76621MF_0108331, 1, (STRLEN(?targetMotifMatchCigarP76621MF_0108331) - STRLEN(REPLACE(?targetMotifMatchCigarP76621MF_0108331, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76621MF_0108331, 1, (STRLEN(?targetMotifMatchCigarP76621MF_0108331) - STRLEN(REPLACE(?targetMotifMatchCigarP76621MF_0108331, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0108332) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'H')) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag50) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag50, ?UNBOUND_VARIABLE) AS ?case8) .
}
"xsd:string |
