| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-30 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-78 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-31 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-79 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-44 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-68 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-69 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-45 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-46 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-47 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-112 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-48 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-49 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-111 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-110 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-114 |
| http://purl.uniprot.org/unirules/MF_01093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01093#construct-template-113 |
| http://purl.uniprot.org/unirules/MF_01093#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01093#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01093#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01093#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01093#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01093#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:379421 up:source unirule:MF_01093 .
_:379422 up:source unirule:MF_01093 .
_:379423 up:source unirule:MF_01093 .
_:379424 up:source unirule:MF_01093 .
_:379425 up:source unirule:MF_01093 .
_:379426 up:source unirule:MF_01093 .
_:379427 up:source unirule:MF_01093 .
_:379428 up:source unirule:MF_01093 .
_:379429 up:source unirule:MF_01093 .
_:379430 up:source unirule:MF_01093 .
_:379431 up:source unirule:MF_01093 .
_:379432 up:source unirule:MF_01093 .
_:379433 up:source unirule:MF_01093 .
_:379434 up:source unirule:MF_01093 .
_:379435 up:source unirule:MF_01093 .
_:379436 up:source unirule:MF_01093 .
_:379437 up:source unirule:MF_01093 .
_:379438 up:source unirule:MF_01093 .
_:379439 up:source unirule:MF_01093 .
_:379440 up:source unirule:MF_01093 .
_:379441 up:source unirule:MF_01093 .
_:379442 up:source unirule:MF_01093 .
_:379443 up:source unirule:MF_01093 .
_:379444 up:source unirule:MF_01093 .
_:379445 up:source unirule:MF_01093 .
_:379446 up:source unirule:MF_01093 .
_:379447 up:source unirule:MF_01093 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0005886 ,
GO:0006730 ,
GO:0030269 ,
keyword:1003 ,
keyword:1133 ,
keyword:1278 ,
keyword:170 ,
keyword:472 ,
keyword:489 ,
keyword:554 ,
keyword:808 ,
keyword:812 ;
up:recommendedName ?name0 .
?name0 up:ecName '7.2.1.4' ;
up:fullName 'Tetrahydromethanopterin S-methyltransferase subunit A' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'N5-methyltetrahydromethanopterin--coenzyme M methyltransferase subunit A' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'mtrA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Part of a complex that catalyzes the formation of methyl-coenzyme M and tetrahydromethanopterin from coenzyme M and methyl-tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:60494 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 5-hydroxybenzimidazolylcobamide group.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'The complex is composed of 8 subunits; MtrA, MtrB, MtrC, MtrD, MtrE, MtrF, MtrG and MtrH.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the MtrA family.' .
?case11 up:classifiedWith GO:0019386 ,
keyword:484 .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:60494 .
?sam19 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane20 faldo:begin ?transmembraneb21 ;
faldo:end ?transmembranee22 .
?transmembraneb21 faldo:position ?transmembranebp23 .
?transmembranee22 faldo:position ?transmembraneep24 .
?keyword25 up:range ?transmembrane20 .
?keyword26 up:range ?transmembrane20 .
?keyword27 up:range ?transmembrane20 .
_:379448 a rdf:Statement ;
up:attribution _:379421 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:379449 a rdf:Statement ;
up:attribution _:379422 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:379450 a rdf:Statement ;
up:attribution _:379423 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:379451 a rdf:Statement ;
up:attribution _:379424 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:379452 a rdf:Statement ;
up:attribution _:379425 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:379453 a rdf:Statement ;
up:attribution _:379426 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:379454 a rdf:Statement ;
up:attribution _:379427 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:379455 a rdf:Statement ;
up:attribution _:379428 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:379456 a rdf:Statement ;
up:attribution _:379429 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:379457 a rdf:Statement ;
up:attribution _:379430 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:554 .
_:379458 a rdf:Statement ;
up:attribution _:379431 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:379459 a rdf:Statement ;
up:attribution _:379432 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1278 .
_:379460 a rdf:Statement ;
up:attribution _:379433 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:379461 a rdf:Statement ;
up:attribution _:379434 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:170 .
_:379462 a rdf:Statement ;
up:attribution _:379435 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:379463 a rdf:Statement ;
up:attribution _:379436 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:379464 a rdf:Statement ;
up:attribution _:379437 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:379465 a rdf:Statement ;
up:attribution _:379438 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:379466 a rdf:Statement ;
up:attribution _:379439 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030269 .
_:379467 a rdf:Statement ;
up:attribution _:379440 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006730 .
_:379468 a rdf:Statement ;
up:attribution _:379441 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:379469 a rdf:Statement ;
up:attribution _:379442 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:484 .
_:379470 a rdf:Statement ;
up:attribution _:379443 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019386 .
_:379471 a rdf:Statement ;
up:source unirule:MF_01093 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:379472 a rdf:Statement ;
up:attribution _:379444 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:379473 a rdf:Statement ;
up:attribution _:379445 ;
rdf:subject ?sam19 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:379474 a rdf:Statement ;
up:attribution _:379446 ;
rdf:subject ?sam19 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:379475 a rdf:Statement ;
up:attribution _:379447 ;
rdf:subject ?sam19 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01093
#Rule MF_01093 Created by:? on:2005-02-28 Modified by:Elisabeth Coudert on:2024-04-15
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01093 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_01093a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01093a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01093a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01093a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01093a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01093a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01093a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01093a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch32 faldo:location ?templateMotifSequenceMatchRegionP8018433 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP8018435 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80184MF_0109328 .
?templateMotifSequenceMatchRegionP8018433 faldo:begin ?templateMotifSequenceMatchBeginP8018434 .
?templateMotifSequenceMatchBeginP8018434 faldo:position ?templateMotifSequenceMatchBeginPositionP8018429 ;
faldo:reference isoform:P80184-1 .
?templateMotifSequenceProfileAlignmentOperationP8018435 edam:has_input signature:MF_01093 ;
rdf:type edam:operation_0300 .
?targetMotifMatch36 faldo:location ?targetMotifMatchRegionMatch37 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0109339 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80184MF_0109330 .
?targetMotifMatchRegionMatch37 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0109338 .
?targetMotifMatchRegionMatchBeginMF_0109338 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0109331 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0109339 edam:has_input signature:MF_01093 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80184MF_0109328, 1, (STRLEN(?templateMotifCigarP80184MF_0109328) - STRLEN(REPLACE(?templateMotifCigarP80184MF_0109328, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP8018429) + 1)), '}'), '')))), '[a-z]', '')) AS ?step140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80184MF_0109330, 1, (STRLEN(?targetMotifMatchCigarP80184MF_0109330) - STRLEN(REPLACE(?targetMotifMatchCigarP80184MF_0109330, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80184MF_0109330, 1, (STRLEN(?targetMotifMatchCigarP80184MF_0109330) - STRLEN(REPLACE(?targetMotifMatchCigarP80184MF_0109330, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step140), '}'), '')))), '[^-]', ''))) AS ?step241) .
BIND(((?step241 + ?targetMotifMatchRegionMatchBeginPositionMF_0109331) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01093a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon43 {taxon:183925 taxon:183939 taxon:224756 taxon:183988}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon43 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane44 ;
up:sequence ?thisSequence .
?samtransmembrane44 up:range ?samtransmembraner45 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner45 faldo:begin ?samtransmembraneb46 ;
faldo:end ?samtransmembranee47 .
?samtransmembraneb46 faldo:position ?samtransmembranebp48 ;
faldo:reference ?thisSequence .
?samtransmembranee47 faldo:position ?samtransmembraneep49 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam19) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01093a25')) AS ?keyword25) .
BIND(URI(CONCAT(STR(?this), '#MF_01093a26')) AS ?keyword26) .
BIND(URI(CONCAT(STR(?this), '#MF_01093a27')) AS ?keyword27) .
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_01093 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01093#construct |
