| http://purl.uniprot.org/unirules/MF_01140#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:398777 up:source unirule:MF_01140 .
_:398778 up:source unirule:MF_01140 .
_:398779 up:source unirule:MF_01140 .
_:398780 up:source unirule:MF_01140 .
_:398781 up:source unirule:MF_01140 .
_:398782 up:source unirule:MF_01140 .
_:398783 up:source unirule:MF_01140 .
_:398784 up:source unirule:MF_01140 .
_:398785 up:source unirule:MF_01140 .
_:398786 up:source unirule:MF_01140 .
_:398787 up:source unirule:MF_01140 .
_:398788 up:source unirule:MF_01140 .
_:398789 up:source unirule:MF_01140 .
_:398790 up:source unirule:MF_01140 .
_:398791 up:source unirule:MF_01140 .
_:398792 up:source unirule:MF_01140 .
_:398793 up:source unirule:MF_01140 .
_:398794 up:source unirule:MF_01140 .
_:398795 up:source unirule:MF_01140 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0016020 ,
GO:0016780 ,
GO:0070726 ,
keyword:1003 ,
keyword:1133 ,
keyword:472 ,
keyword:735 ,
keyword:808 ,
keyword:812 ,
keyword:961 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.8.-' ;
up:fullName 'Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'tagU' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'May catalyze the final step in cell wall teichoic acid biosynthesis, the transfer of the anionic cell wall polymers (APs) from their lipid-linked precursor to the cell wall peptidoglycan (PG).' .
?annotation3 a up:Pathway_Annotation ;
rdfs:comment 'Cell wall biogenesis.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the LytR/CpsA/Psr (LCP) family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Signal-anchor for type II membrane protein' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Extracellular' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
_:398796 a rdf:Statement ;
up:attribution _:398777 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:398797 a rdf:Statement ;
up:attribution _:398778 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:398798 a rdf:Statement ;
up:attribution _:398779 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:398799 a rdf:Statement ;
up:attribution _:398780 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:398800 a rdf:Statement ;
up:attribution _:398781 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:398801 a rdf:Statement ;
up:attribution _:398782 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:398802 a rdf:Statement ;
up:attribution _:398783 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:398803 a rdf:Statement ;
up:attribution _:398784 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:961 .
_:398804 a rdf:Statement ;
up:attribution _:398785 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:398805 a rdf:Statement ;
up:attribution _:398786 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:735 .
_:398806 a rdf:Statement ;
up:attribution _:398787 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:398807 a rdf:Statement ;
up:attribution _:398788 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:398808 a rdf:Statement ;
up:attribution _:398789 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:398809 a rdf:Statement ;
up:attribution _:398790 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016780 .
_:398810 a rdf:Statement ;
up:attribution _:398791 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070726 .
_:398811 a rdf:Statement ;
up:attribution _:398792 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016020 .
_:398812 a rdf:Statement ;
up:source unirule:MF_01140 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:398813 a rdf:Statement ;
up:attribution _:398793 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:398814 a rdf:Statement ;
up:source unirule:MF_01140 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:398815 a rdf:Statement ;
up:attribution _:398794 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:398816 a rdf:Statement ;
up:source unirule:MF_01140 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:398817 a rdf:Statement ;
up:attribution _:398795 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01140
#Rule MF_01140 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01140 .
?thisOrganism rdfs:subClassOf+ taxon:1239 .
BIND(URI(CONCAT(STR(?this), '#MF_01140a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01140a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01140a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01140a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01140a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionQ0211530 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0211532 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ02115MF_0114025 .
?templateMotifSequenceMatchRegionQ0211530 faldo:begin ?templateMotifSequenceMatchBeginQ0211531 .
?templateMotifSequenceMatchBeginQ0211531 faldo:position ?templateMotifSequenceMatchBeginPositionQ0211526 ;
faldo:reference isoform:Q02115-1 .
?templateMotifSequenceProfileAlignmentOperationQ0211532 edam:has_input signature:MF_01140 ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0114036 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ02115MF_0114027 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0114035 .
?targetMotifMatchRegionMatchBeginMF_0114035 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0114028 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0114036 edam:has_input signature:MF_01140 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ02115MF_0114025, 1, (STRLEN(?templateMotifCigarQ02115MF_0114025) - STRLEN(REPLACE(?templateMotifCigarQ02115MF_0114025, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionQ0211526) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ02115MF_0114027, 1, (STRLEN(?targetMotifMatchCigarQ02115MF_0114027) - STRLEN(REPLACE(?targetMotifMatchCigarQ02115MF_0114027, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ02115MF_0114027, 1, (STRLEN(?targetMotifMatchCigarQ02115MF_0114027) - STRLEN(REPLACE(?targetMotifMatchCigarQ02115MF_0114027, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0114028) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((BOUND(?thisPositionOn11) && BOUND(?thisPositionOn12))) .
BIND(URI(CONCAT(STR(?this), '#MF_01140a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionQ0211545 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0211547 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ02115MF_0114040 .
?templateMotifSequenceMatchRegionQ0211545 faldo:begin ?templateMotifSequenceMatchBeginQ0211546 .
?templateMotifSequenceMatchBeginQ0211546 faldo:position ?templateMotifSequenceMatchBeginPositionQ0211541 ;
faldo:reference isoform:Q02115-1 .
?templateMotifSequenceProfileAlignmentOperationQ0211547 edam:has_input signature:MF_01140 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0114051 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ02115MF_0114042 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0114050 .
?targetMotifMatchRegionMatchBeginMF_0114050 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0114043 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0114051 edam:has_input signature:MF_01140 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ02115MF_0114040, 1, (STRLEN(?templateMotifCigarQ02115MF_0114040) - STRLEN(REPLACE(?templateMotifCigarQ02115MF_0114040, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionQ0211541) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ02115MF_0114042, 1, (STRLEN(?targetMotifMatchCigarQ02115MF_0114042) - STRLEN(REPLACE(?targetMotifMatchCigarQ02115MF_0114042, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ02115MF_0114042, 1, (STRLEN(?targetMotifMatchCigarQ02115MF_0114042) - STRLEN(REPLACE(?targetMotifMatchCigarQ02115MF_0114042, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0114043) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ02115MF_0114040, 1, (STRLEN(?templateMotifCigarQ02115MF_0114040) - STRLEN(REPLACE(?templateMotifCigarQ02115MF_0114040, CONCAT('^(?:-*[^-]){', STR(((32 - ?templateMotifSequenceMatchBeginPositionQ0211541) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ02115MF_0114042, 1, (STRLEN(?targetMotifMatchCigarQ02115MF_0114042) - STRLEN(REPLACE(?targetMotifMatchCigarQ02115MF_0114042, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ02115MF_0114042, 1, (STRLEN(?targetMotifMatchCigarQ02115MF_0114042) - STRLEN(REPLACE(?targetMotifMatchCigarQ02115MF_0114042, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0114043) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) .
BIND(URI(CONCAT(STR(?this), '#MF_01140a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionQ0211562 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0211564 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ02115MF_0114057 .
?templateMotifSequenceMatchRegionQ0211562 faldo:begin ?templateMotifSequenceMatchBeginQ0211563 .
?templateMotifSequenceMatchBeginQ0211563 faldo:position ?templateMotifSequenceMatchBeginPositionQ0211558 ;
faldo:reference isoform:Q02115-1 .
?templateMotifSequenceProfileAlignmentOperationQ0211564 edam:has_input signature:MF_01140 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0114068 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ02115MF_0114059 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0114067 .
?targetMotifMatchRegionMatchBeginMF_0114067 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0114060 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0114068 edam:has_input signature:MF_01140 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ02115MF_0114057, 1, (STRLEN(?templateMotifCigarQ02115MF_0114057) - STRLEN(REPLACE(?templateMotifCigarQ02115MF_0114057, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionQ0211558) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ02115MF_0114059, 1, (STRLEN(?targetMotifMatchCigarQ02115MF_0114059) - STRLEN(REPLACE(?targetMotifMatchCigarQ02115MF_0114059, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ02115MF_0114059, 1, (STRLEN(?targetMotifMatchCigarQ02115MF_0114059) - STRLEN(REPLACE(?targetMotifMatchCigarQ02115MF_0114059, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0114060) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((BOUND(?thisPositionOn23) && BOUND(?thisPositionOn24))) .
BIND(URI(CONCAT(STR(?this), '#MF_01140a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
}
"xsd:string |
