| http://purl.uniprot.org/unirules/MF_01159#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:404095 up:source unirule:MF_01159 .
_:404096 up:source unirule:MF_01159 .
_:404097 up:source unirule:MF_01159 .
_:404098 up:source unirule:MF_01159 .
_:404099 up:source unirule:MF_01159 .
_:404100 up:source unirule:MF_01159 .
_:404101 up:source unirule:MF_01159 .
_:404102 up:source unirule:MF_01159 .
_:404103 up:source unirule:MF_01159 .
_:404104 up:source unirule:MF_01159 .
_:404105 up:source unirule:MF_01159 .
_:404106 up:source unirule:MF_01159 .
_:404107 up:source unirule:MF_01159 .
_:404108 up:source unirule:MF_01159 .
_:404109 up:source unirule:MF_01159 .
_:404110 up:source unirule:MF_01159 .
_:404111 up:source unirule:MF_01159 .
_:404112 up:source unirule:MF_01159 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0008156 ,
GO:0043590 ,
keyword:235 ,
keyword:236 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Replication initiation control protein YabA' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'yabA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Involved in control of chromosome replication initiation. Inhibits the cooperative binding of DnaA to the oriC region, thus negatively regulating initiation of chromosome replication. Inhibits the ability of DnaA-ATP to form a helix on DNA; does not disassemble preformed DnaA-DNA helices. Decreases the residence time of DnaA on the chromosome at its binding sites (oriC, replication forks and promoter-binding sites). Tethers DnaA to the replication machinery via the DNA polymerase beta sliding clamp subunit (dnaN). Associates with oriC and other DnaA targets on the chromosome in a DnaA-dependent manner.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer. Interacts with both DnaA and DnaN, acting as a bridge between these two proteins.' .
?annotation4 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Localizes in tight foci, which correspond to the replisome at mid-cell throughout the cell cycle' .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the YabA family.' .
?case7 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs8 up:annotation ?annotation9 ,
?annotation15 ,
?annotation21 ,
?annotation27 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:29105 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:29105 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:29105 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:29105 .
_:404113 a rdf:Statement ;
up:attribution _:404095 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:404114 a rdf:Statement ;
up:attribution _:404096 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:404115 a rdf:Statement ;
up:attribution _:404097 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:404116 a rdf:Statement ;
up:attribution _:404098 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:404117 a rdf:Statement ;
up:attribution _:404099 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:404118 a rdf:Statement ;
up:attribution _:404100 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:404119 a rdf:Statement ;
up:attribution _:404101 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:404120 a rdf:Statement ;
up:attribution _:404102 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:235 .
_:404121 a rdf:Statement ;
up:attribution _:404103 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:236 .
_:404122 a rdf:Statement ;
up:attribution _:404104 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008156 .
_:404123 a rdf:Statement ;
up:attribution _:404105 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043590 .
_:404124 a rdf:Statement ;
up:attribution _:404106 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:404125 a rdf:Statement ;
up:attribution _:404107 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:404126 a rdf:Statement ;
up:attribution _:404108 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:404127 a rdf:Statement ;
up:source unirule:MF_01159 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:404128 a rdf:Statement ;
up:attribution _:404109 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:404129 a rdf:Statement ;
up:source unirule:MF_01159 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:404130 a rdf:Statement ;
up:attribution _:404110 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:404131 a rdf:Statement ;
up:source unirule:MF_01159 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:404132 a rdf:Statement ;
up:attribution _:404111 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:404133 a rdf:Statement ;
up:source unirule:MF_01159 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:404134 a rdf:Statement ;
up:attribution _:404112 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01159
#Rule MF_01159 Created by:? on:2005-02-28 Modified by:Andrea Auchincloss on:2024-11-21
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01159 .
?thisOrganism rdfs:subClassOf+ taxon:1239 .
BIND(URI(CONCAT(STR(?this), '#MF_01159a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01159a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01159a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01159a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01159a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch37 faldo:location ?templateMotifSequenceMatchRegionP3754238 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3754240 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37542MF_0115933 .
?templateMotifSequenceMatchRegionP3754238 faldo:begin ?templateMotifSequenceMatchBeginP3754239 .
?templateMotifSequenceMatchBeginP3754239 faldo:position ?templateMotifSequenceMatchBeginPositionP3754234 ;
faldo:reference isoform:P37542-1 .
?templateMotifSequenceProfileAlignmentOperationP3754240 edam:has_input signature:MF_01159 ;
rdf:type edam:operation_0300 .
?targetMotifMatch41 faldo:location ?targetMotifMatchRegionMatch42 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0115944 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37542MF_0115935 .
?targetMotifMatchRegionMatch42 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0115943 .
?targetMotifMatchRegionMatchBeginMF_0115943 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0115936 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0115944 edam:has_input signature:MF_01159 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37542MF_0115933, 1, (STRLEN(?templateMotifCigarP37542MF_0115933) - STRLEN(REPLACE(?templateMotifCigarP37542MF_0115933, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionP3754234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37542MF_0115935, 1, (STRLEN(?targetMotifMatchCigarP37542MF_0115935) - STRLEN(REPLACE(?targetMotifMatchCigarP37542MF_0115935, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37542MF_0115935, 1, (STRLEN(?targetMotifMatchCigarP37542MF_0115935) - STRLEN(REPLACE(?targetMotifMatchCigarP37542MF_0115935, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0115936) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37542MF_0115933, 1, (STRLEN(?templateMotifCigarP37542MF_0115933) - STRLEN(REPLACE(?templateMotifCigarP37542MF_0115933, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionP3754234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37542MF_0115935, 1, (STRLEN(?targetMotifMatchCigarP37542MF_0115935) - STRLEN(REPLACE(?targetMotifMatchCigarP37542MF_0115935, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37542MF_0115935, 1, (STRLEN(?targetMotifMatchCigarP37542MF_0115935) - STRLEN(REPLACE(?targetMotifMatchCigarP37542MF_0115935, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0115936) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37542MF_0115933, 1, (STRLEN(?templateMotifCigarP37542MF_0115933) - STRLEN(REPLACE(?templateMotifCigarP37542MF_0115933, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionP3754234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37542MF_0115935, 1, (STRLEN(?targetMotifMatchCigarP37542MF_0115935) - STRLEN(REPLACE(?targetMotifMatchCigarP37542MF_0115935, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37542MF_0115935, 1, (STRLEN(?targetMotifMatchCigarP37542MF_0115935) - STRLEN(REPLACE(?targetMotifMatchCigarP37542MF_0115935, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0115936) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37542MF_0115933, 1, (STRLEN(?templateMotifCigarP37542MF_0115933) - STRLEN(REPLACE(?templateMotifCigarP37542MF_0115933, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP3754234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37542MF_0115935, 1, (STRLEN(?targetMotifMatchCigarP37542MF_0115935) - STRLEN(REPLACE(?targetMotifMatchCigarP37542MF_0115935, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37542MF_0115935, 1, (STRLEN(?targetMotifMatchCigarP37542MF_0115935) - STRLEN(REPLACE(?targetMotifMatchCigarP37542MF_0115935, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0115936) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag57) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag57, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
