| http://purl.uniprot.org/unirules/MF_01167#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:408245 up:source unirule:MF_01167 .
_:408246 up:source unirule:MF_01167 .
_:408247 up:source unirule:MF_01167 .
_:408248 up:source unirule:MF_01167 .
_:408249 up:source unirule:MF_01167 .
_:408250 up:source unirule:MF_01167 .
_:408251 up:source unirule:MF_01167 .
_:408252 up:source unirule:MF_01167 .
_:408253 up:source unirule:MF_01167 .
_:408254 up:source unirule:MF_01167 .
_:408255 up:source unirule:MF_01167 .
_:408256 up:source unirule:MF_01167 .
_:408257 up:source unirule:MF_01167 .
_:408258 up:source unirule:MF_01167 .
_:408259 up:source unirule:MF_01167 .
_:408260 up:source unirule:MF_01167 .
_:408261 up:source unirule:MF_01167 .
_:408262 up:source unirule:MF_01167 .
_:408263 up:source unirule:MF_01167 .
_:408264 up:source unirule:MF_01167 .
_:408265 up:source unirule:MF_01167 .
_:408266 up:source unirule:MF_01167 .
_:408267 up:source unirule:MF_01167 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0008483 ,
GO:0009103 ,
GO:0046493 ,
keyword:32 ,
keyword:441 ,
keyword:443 ,
keyword:444 ,
keyword:448 ,
keyword:46 ,
keyword:663 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.6.1.87' ;
up:fullName 'UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'UDP-4-amino-4-deoxy-L-arabinose aminotransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName "UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase" ;
up:shortName 'UDP-Ara4O aminotransferase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'arnB' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of UDP-4-keto-arabinose (UDP-Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Nucleotide-sugar biosynthesis; UDP-4-deoxy-4-formamido-beta-L-arabinose biosynthesis; UDP-4-deoxy-4-formamido-beta-L-arabinose from UDP-alpha-D-glucuronate: step 2/3.' .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis.' .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DegT/DnrJ/EryC1 family. ArnB subfamily.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
_:408268 a rdf:Statement ;
up:attribution _:408245 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:408269 a rdf:Statement ;
up:attribution _:408246 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:408270 a rdf:Statement ;
up:attribution _:408247 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:408271 a rdf:Statement ;
up:attribution _:408248 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:408272 a rdf:Statement ;
up:attribution _:408249 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:408273 a rdf:Statement ;
up:attribution _:408250 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:408274 a rdf:Statement ;
up:attribution _:408251 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:408275 a rdf:Statement ;
up:attribution _:408252 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:408276 a rdf:Statement ;
up:attribution _:408253 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:408277 a rdf:Statement ;
up:attribution _:408254 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:408278 a rdf:Statement ;
up:attribution _:408255 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:408279 a rdf:Statement ;
up:attribution _:408256 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:32 .
_:408280 a rdf:Statement ;
up:attribution _:408257 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:46 .
_:408281 a rdf:Statement ;
up:attribution _:408258 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:441 .
_:408282 a rdf:Statement ;
up:attribution _:408259 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:444 .
_:408283 a rdf:Statement ;
up:attribution _:408260 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:443 .
_:408284 a rdf:Statement ;
up:attribution _:408261 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:448 .
_:408285 a rdf:Statement ;
up:attribution _:408262 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:408286 a rdf:Statement ;
up:attribution _:408263 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:408287 a rdf:Statement ;
up:attribution _:408264 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008483 .
_:408288 a rdf:Statement ;
up:attribution _:408265 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046493 .
_:408289 a rdf:Statement ;
up:attribution _:408266 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009103 .
_:408290 a rdf:Statement ;
up:source unirule:MF_01167 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:408291 a rdf:Statement ;
up:attribution _:408267 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01167
#Rule MF_01167 Created by:? on:2005-11-11 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01167 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01167a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01167a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01167a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01167a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01167a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01167a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01167a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01167a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01167a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01167a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch22 faldo:location ?templateMotifSequenceMatchRegionQ8ZNF323 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZNF325 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZNF3MF_0116718 .
?templateMotifSequenceMatchRegionQ8ZNF323 faldo:begin ?templateMotifSequenceMatchBeginQ8ZNF324 .
?templateMotifSequenceMatchBeginQ8ZNF324 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZNF319 ;
faldo:reference isoform:Q8ZNF3-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZNF325 edam:has_input signature:MF_01167 ;
rdf:type edam:operation_0300 .
?targetMotifMatch26 faldo:location ?targetMotifMatchRegionMatch27 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0116729 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZNF3MF_0116720 .
?targetMotifMatchRegionMatch27 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0116728 .
?targetMotifMatchRegionMatchBeginMF_0116728 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0116721 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0116729 edam:has_input signature:MF_01167 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZNF3MF_0116718, 1, (STRLEN(?templateMotifCigarQ8ZNF3MF_0116718) - STRLEN(REPLACE(?templateMotifCigarQ8ZNF3MF_0116718, CONCAT('^(?:-*[^-]){', STR(((188 - ?templateMotifSequenceMatchBeginPositionQ8ZNF319) + 1)), '}'), '')))), '[a-z]', '')) AS ?step130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZNF3MF_0116720, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF3MF_0116720) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF3MF_0116720, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZNF3MF_0116720, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF3MF_0116720) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF3MF_0116720, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), '')))), '[^-]', ''))) AS ?step231) .
BIND(((?step231 + ?targetMotifMatchRegionMatchBeginPositionMF_0116721) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01167a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
}
"xsd:string |
