| http://purl.uniprot.org/unirules/MF_01201#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:420232 up:source unirule:MF_01201 .
_:420233 up:source unirule:MF_01201 .
_:420234 up:source unirule:MF_01201 .
_:420235 up:source unirule:MF_01201 .
_:420236 up:source unirule:MF_01201 .
_:420237 up:source unirule:MF_01201 .
_:420238 up:source unirule:MF_01201 .
_:420239 up:source unirule:MF_01201 .
_:420240 up:source unirule:MF_01201 .
_:420241 up:source unirule:MF_01201 .
_:420242 up:source unirule:MF_01201 .
_:420243 up:source unirule:MF_01201 .
_:420244 up:source unirule:MF_01201 .
_:420245 up:source unirule:MF_01201 .
_:420246 up:source unirule:MF_01201 .
_:420247 up:source unirule:MF_01201 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0008784 ,
GO:0030170 ,
GO:0030632 ,
keyword:413 ,
keyword:663 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.1.1.1' ;
up:fullName 'Alanine racemase' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the alanine racemase family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor; specific for D-alanine' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor; specific for L-alanine' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf ?molecule24 .
?molecule24 rdfs:label 'substrate' .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf ?molecule32 .
?molecule32 rdfs:label 'substrate' .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
_:420248 a rdf:Statement ;
up:attribution _:420232 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:420249 a rdf:Statement ;
up:attribution _:420233 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:420250 a rdf:Statement ;
up:attribution _:420234 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:420251 a rdf:Statement ;
up:attribution _:420235 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:420252 a rdf:Statement ;
up:attribution _:420236 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:420253 a rdf:Statement ;
up:attribution _:420237 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:420254 a rdf:Statement ;
up:attribution _:420238 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:420255 a rdf:Statement ;
up:attribution _:420239 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:420256 a rdf:Statement ;
up:attribution _:420240 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008784 .
_:420257 a rdf:Statement ;
up:attribution _:420241 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030170 .
_:420258 a rdf:Statement ;
up:attribution _:420242 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030632 .
_:420259 a rdf:Statement ;
up:source unirule:MF_01201 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:420260 a rdf:Statement ;
up:attribution _:420243 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:420261 a rdf:Statement ;
up:source unirule:MF_01201 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:420262 a rdf:Statement ;
up:attribution _:420244 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:420263 a rdf:Statement ;
up:source unirule:MF_01201 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:420264 a rdf:Statement ;
up:attribution _:420245 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:420265 a rdf:Statement ;
up:source unirule:MF_01201 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:420266 a rdf:Statement ;
up:attribution _:420246 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:420267 a rdf:Statement ;
up:source unirule:MF_01201 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:420268 a rdf:Statement ;
up:attribution _:420247 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01201
#Rule MF_01201 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-05-07
VALUES ?supertaxon41 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01201 .
?thisOrganism rdfs:subClassOf+ ?supertaxon41 .
BIND(URI(CONCAT(STR(?this), '#MF_01201a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01201a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01201a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01201a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01201a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01201a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch46 faldo:location ?templateMotifSequenceMatchRegionP1072447 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1072449 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10724MF_0120142 .
?templateMotifSequenceMatchRegionP1072447 faldo:begin ?templateMotifSequenceMatchBeginP1072448 .
?templateMotifSequenceMatchBeginP1072448 faldo:position ?templateMotifSequenceMatchBeginPositionP1072443 ;
faldo:reference isoform:P10724-1 .
?templateMotifSequenceProfileAlignmentOperationP1072449 edam:has_input signature:MF_01201 ;
rdf:type edam:operation_0300 .
?targetMotifMatch50 faldo:location ?targetMotifMatchRegionMatch51 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0120153 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10724MF_0120144 .
?targetMotifMatchRegionMatch51 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0120152 .
?targetMotifMatchRegionMatchBeginMF_0120152 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0120145 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0120153 edam:has_input signature:MF_01201 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10724MF_0120142, 1, (STRLEN(?templateMotifCigarP10724MF_0120142) - STRLEN(REPLACE(?templateMotifCigarP10724MF_0120142, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP1072443) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10724MF_0120144, 1, (STRLEN(?targetMotifMatchCigarP10724MF_0120144) - STRLEN(REPLACE(?targetMotifMatchCigarP10724MF_0120144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10724MF_0120144, 1, (STRLEN(?targetMotifMatchCigarP10724MF_0120144) - STRLEN(REPLACE(?targetMotifMatchCigarP10724MF_0120144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0120145) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01201a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionP1072462 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1072464 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10724MF_0120157 .
?templateMotifSequenceMatchRegionP1072462 faldo:begin ?templateMotifSequenceMatchBeginP1072463 .
?templateMotifSequenceMatchBeginP1072463 faldo:position ?templateMotifSequenceMatchBeginPositionP1072458 ;
faldo:reference isoform:P10724-1 .
?templateMotifSequenceProfileAlignmentOperationP1072464 edam:has_input signature:MF_01201 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0120168 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10724MF_0120159 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0120167 .
?targetMotifMatchRegionMatchBeginMF_0120167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0120160 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0120168 edam:has_input signature:MF_01201 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10724MF_0120157, 1, (STRLEN(?templateMotifCigarP10724MF_0120157) - STRLEN(REPLACE(?templateMotifCigarP10724MF_0120157, CONCAT('^(?:-*[^-]){', STR(((265 - ?templateMotifSequenceMatchBeginPositionP1072458) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10724MF_0120159, 1, (STRLEN(?targetMotifMatchCigarP10724MF_0120159) - STRLEN(REPLACE(?targetMotifMatchCigarP10724MF_0120159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10724MF_0120159, 1, (STRLEN(?targetMotifMatchCigarP10724MF_0120159) - STRLEN(REPLACE(?targetMotifMatchCigarP10724MF_0120159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0120160) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01201a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch76 faldo:location ?templateMotifSequenceMatchRegionP1072477 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1072479 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10724MF_0120172 .
?templateMotifSequenceMatchRegionP1072477 faldo:begin ?templateMotifSequenceMatchBeginP1072478 .
?templateMotifSequenceMatchBeginP1072478 faldo:position ?templateMotifSequenceMatchBeginPositionP1072473 ;
faldo:reference isoform:P10724-1 .
?templateMotifSequenceProfileAlignmentOperationP1072479 edam:has_input signature:MF_01201 ;
rdf:type edam:operation_0300 .
?targetMotifMatch80 faldo:location ?targetMotifMatchRegionMatch81 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0120183 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10724MF_0120174 .
?targetMotifMatchRegionMatch81 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0120182 .
?targetMotifMatchRegionMatchBeginMF_0120182 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0120175 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0120183 edam:has_input signature:MF_01201 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10724MF_0120172, 1, (STRLEN(?templateMotifCigarP10724MF_0120172) - STRLEN(REPLACE(?templateMotifCigarP10724MF_0120172, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP1072473) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10724MF_0120174, 1, (STRLEN(?targetMotifMatchCigarP10724MF_0120174) - STRLEN(REPLACE(?targetMotifMatchCigarP10724MF_0120174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10724MF_0120174, 1, (STRLEN(?targetMotifMatchCigarP10724MF_0120174) - STRLEN(REPLACE(?targetMotifMatchCigarP10724MF_0120174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0120175) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01201a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionP1072492 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1072494 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10724MF_0120187 .
?templateMotifSequenceMatchRegionP1072492 faldo:begin ?templateMotifSequenceMatchBeginP1072493 .
?templateMotifSequenceMatchBeginP1072493 faldo:position ?templateMotifSequenceMatchBeginPositionP1072488 ;
faldo:reference isoform:P10724-1 .
?templateMotifSequenceProfileAlignmentOperationP1072494 edam:has_input signature:MF_01201 ;
rdf:type edam:operation_0300 .
?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0120198 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10724MF_0120189 .
?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0120197 .
?targetMotifMatchRegionMatchBeginMF_0120197 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0120190 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0120198 edam:has_input signature:MF_01201 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10724MF_0120187, 1, (STRLEN(?templateMotifCigarP10724MF_0120187) - STRLEN(REPLACE(?templateMotifCigarP10724MF_0120187, CONCAT('^(?:-*[^-]){', STR(((312 - ?templateMotifSequenceMatchBeginPositionP1072488) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10724MF_0120189, 1, (STRLEN(?targetMotifMatchCigarP10724MF_0120189) - STRLEN(REPLACE(?targetMotifMatchCigarP10724MF_0120189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10724MF_0120189, 1, (STRLEN(?targetMotifMatchCigarP10724MF_0120189) - STRLEN(REPLACE(?targetMotifMatchCigarP10724MF_0120189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0120190) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_01201a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionP10724107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10724109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10724MF_01201102 .
?templateMotifSequenceMatchRegionP10724107 faldo:begin ?templateMotifSequenceMatchBeginP10724108 .
?templateMotifSequenceMatchBeginP10724108 faldo:position ?templateMotifSequenceMatchBeginPositionP10724103 ;
faldo:reference isoform:P10724-1 .
?templateMotifSequenceProfileAlignmentOperationP10724109 edam:has_input signature:MF_01201 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01201113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10724MF_01201104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01201112 .
?targetMotifMatchRegionMatchBeginMF_01201112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01201105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01201113 edam:has_input signature:MF_01201 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10724MF_01201102, 1, (STRLEN(?templateMotifCigarP10724MF_01201102) - STRLEN(REPLACE(?templateMotifCigarP10724MF_01201102, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP10724103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10724MF_01201104, 1, (STRLEN(?targetMotifMatchCigarP10724MF_01201104) - STRLEN(REPLACE(?targetMotifMatchCigarP10724MF_01201104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10724MF_01201104, 1, (STRLEN(?targetMotifMatchCigarP10724MF_01201104) - STRLEN(REPLACE(?targetMotifMatchCigarP10724MF_01201104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01201105) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01201a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
}
"xsd:string |
