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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_01282#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01282#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_01282#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01282#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_01282#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01282#construct-template-31 |
| http://purl.uniprot.org/unirules/MF_01282#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01282#construct-template-79 |
| http://purl.uniprot.org/unirules/MF_01282#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01282#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_01282#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01282#construct-template-39 |
| http://purl.uniprot.org/unirules/MF_01282#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01282#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01282#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01282#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01282#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01282#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:457764 up:source unirule:MF_01282 . _:457765 up:source unirule:MF_01282 . _:457766 up:source unirule:MF_01282 . _:457767 up:source unirule:MF_01282 . _:457768 up:source unirule:MF_01282 . _:457769 up:source unirule:MF_01282 . _:457770 up:source unirule:MF_01282 . _:457771 up:source unirule:MF_01282 . _:457772 up:source unirule:MF_01282 . _:457773 up:source unirule:MF_01282 . _:457774 up:source unirule:MF_01282 . _:457775 up:source unirule:MF_01282 . _:457776 up:source unirule:MF_01282 . _:457777 up:source unirule:MF_01282 . _:457778 up:source unirule:MF_01282 . _:457779 up:source unirule:MF_01282 . _:457780 up:source unirule:MF_01282 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation5 , ?annotation6 ; up:classifiedWith GO:0016835 , GO:0017001 , keyword:456 , keyword:460 , keyword:46 , keyword:479 ; up:recommendedName ?name0 . ?name0 up:ecName '4.2.99.-' ; up:fullName 'Virginiamycin B lyase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Streptogramin B lyase' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'vgb' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid.' . ?annotation4 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation . ?annotation5 a up:Subunit_Annotation ; rdfs:comment 'Monomer.' . ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the Vgb family.' . ?pfs7 up:annotation ?annotation8 . ?annotation8 faldo:begin ?pfsb9 ; faldo:end ?pfse10 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb9 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfse10 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:18420 . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:18420 . ?pfs27 up:annotation ?annotation28 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; up:ligand ?ligand31 ; rdf:type up:Binding_Site_Annotation . ?pfsb29 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand31 rdfs:subClassOf ?molecule32 . ?molecule32 rdfs:label 'substrate' . _:457781 a rdf:Statement ; up:attribution _:457764 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:457782 a rdf:Statement ; up:attribution _:457765 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:457783 a rdf:Statement ; up:attribution _:457766 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:457784 a rdf:Statement ; up:attribution _:457767 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:457785 a rdf:Statement ; up:attribution _:457768 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:457786 a rdf:Statement ; up:attribution _:457769 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:457787 a rdf:Statement ; up:attribution _:457770 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:457788 a rdf:Statement ; up:attribution _:457771 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:46 . _:457789 a rdf:Statement ; up:attribution _:457772 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:456 . _:457790 a rdf:Statement ; up:attribution _:457773 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:457791 a rdf:Statement ; up:attribution _:457774 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:457792 a rdf:Statement ; up:attribution _:457775 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016835 . _:457793 a rdf:Statement ; up:attribution _:457776 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0017001 . _:457794 a rdf:Statement ; up:source unirule:MF_01282 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:457795 a rdf:Statement ; up:attribution _:457777 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:457796 a rdf:Statement ; up:source unirule:MF_01282 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:457797 a rdf:Statement ; up:attribution _:457778 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:457798 a rdf:Statement ; up:source unirule:MF_01282 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:457799 a rdf:Statement ; up:attribution _:457779 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:457800 a rdf:Statement ; up:source unirule:MF_01282 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:457801 a rdf:Statement ; up:attribution _:457780 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01282 #Rule MF_01282 Created by:? on:2007-11-13 Modified by:Edouard de Castro on:2023-01-26 VALUES ?supertaxon35 {taxon:201174 taxon:1239 taxon:1224} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01282 . ?thisOrganism rdfs:subClassOf+ ?supertaxon35 . BIND(URI(CONCAT(STR(?this), '#MF_01282a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01282a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01282a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01282a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01282a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01282a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionP1797841 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1797843 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP17978MF_0128236 . ?templateMotifSequenceMatchRegionP1797841 faldo:begin ?templateMotifSequenceMatchBeginP1797842 . ?templateMotifSequenceMatchBeginP1797842 faldo:position ?templateMotifSequenceMatchBeginPositionP1797837 ; faldo:reference isoform:P17978-1 . ?templateMotifSequenceProfileAlignmentOperationP1797843 edam:has_input signature:MF_01282 ; rdf:type edam:operation_0300 . ?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0128247 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP17978MF_0128238 . ?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0128246 . ?targetMotifMatchRegionMatchBeginMF_0128246 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0128239 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0128247 edam:has_input signature:MF_01282 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17978MF_0128236, 1, (STRLEN(?templateMotifCigarP17978MF_0128236) - STRLEN(REPLACE(?templateMotifCigarP17978MF_0128236, CONCAT('^(?:-*[^-]){', STR(((270 - ?templateMotifSequenceMatchBeginPositionP1797837) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17978MF_0128238, 1, (STRLEN(?targetMotifMatchCigarP17978MF_0128238) - STRLEN(REPLACE(?targetMotifMatchCigarP17978MF_0128238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17978MF_0128238, 1, (STRLEN(?targetMotifMatchCigarP17978MF_0128238) - STRLEN(REPLACE(?targetMotifMatchCigarP17978MF_0128238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) . BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0128239) - 1) AS ?thisPositionOn11) . BIND(?thisPositionOn11 AS ?thisPositionOn12) . BIND(?this AS ?pfs1t50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01282a8')) AS ?annotation8) . BIND(?this AS ?pfs7) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch55 faldo:location ?templateMotifSequenceMatchRegionP1797856 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1797858 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP17978MF_0128251 . ?templateMotifSequenceMatchRegionP1797856 faldo:begin ?templateMotifSequenceMatchBeginP1797857 . ?templateMotifSequenceMatchBeginP1797857 faldo:position ?templateMotifSequenceMatchBeginPositionP1797852 ; faldo:reference isoform:P17978-1 . ?templateMotifSequenceProfileAlignmentOperationP1797858 edam:has_input signature:MF_01282 ; rdf:type edam:operation_0300 . ?targetMotifMatch59 faldo:location ?targetMotifMatchRegionMatch60 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0128262 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP17978MF_0128253 . ?targetMotifMatchRegionMatch60 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0128261 . ?targetMotifMatchRegionMatchBeginMF_0128261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0128254 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0128262 edam:has_input signature:MF_01282 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17978MF_0128251, 1, (STRLEN(?templateMotifCigarP17978MF_0128251) - STRLEN(REPLACE(?templateMotifCigarP17978MF_0128251, CONCAT('^(?:-*[^-]){', STR(((268 - ?templateMotifSequenceMatchBeginPositionP1797852) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17978MF_0128253, 1, (STRLEN(?targetMotifMatchCigarP17978MF_0128253) - STRLEN(REPLACE(?targetMotifMatchCigarP17978MF_0128253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17978MF_0128253, 1, (STRLEN(?targetMotifMatchCigarP17978MF_0128253) - STRLEN(REPLACE(?targetMotifMatchCigarP17978MF_0128253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) . BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0128254) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs1t65) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01282a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionP1797871 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1797873 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP17978MF_0128266 . ?templateMotifSequenceMatchRegionP1797871 faldo:begin ?templateMotifSequenceMatchBeginP1797872 . ?templateMotifSequenceMatchBeginP1797872 faldo:position ?templateMotifSequenceMatchBeginPositionP1797867 ; faldo:reference isoform:P17978-1 . ?templateMotifSequenceProfileAlignmentOperationP1797873 edam:has_input signature:MF_01282 ; rdf:type edam:operation_0300 . ?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0128277 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP17978MF_0128268 . ?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0128276 . ?targetMotifMatchRegionMatchBeginMF_0128276 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0128269 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0128277 edam:has_input signature:MF_01282 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17978MF_0128266, 1, (STRLEN(?templateMotifCigarP17978MF_0128266) - STRLEN(REPLACE(?templateMotifCigarP17978MF_0128266, CONCAT('^(?:-*[^-]){', STR(((284 - ?templateMotifSequenceMatchBeginPositionP1797867) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17978MF_0128268, 1, (STRLEN(?targetMotifMatchCigarP17978MF_0128268) - STRLEN(REPLACE(?targetMotifMatchCigarP17978MF_0128268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17978MF_0128268, 1, (STRLEN(?targetMotifMatchCigarP17978MF_0128268) - STRLEN(REPLACE(?targetMotifMatchCigarP17978MF_0128268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) . BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0128269) - 1) AS ?thisPositionOn25) . BIND(?thisPositionOn25 AS ?thisPositionOn26) . BIND(?this AS ?pfs1t80) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01282a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionP1797886 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1797888 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP17978MF_0128281 . ?templateMotifSequenceMatchRegionP1797886 faldo:begin ?templateMotifSequenceMatchBeginP1797887 . ?templateMotifSequenceMatchBeginP1797887 faldo:position ?templateMotifSequenceMatchBeginPositionP1797882 ; faldo:reference isoform:P17978-1 . ?templateMotifSequenceProfileAlignmentOperationP1797888 edam:has_input signature:MF_01282 ; rdf:type edam:operation_0300 . ?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0128292 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP17978MF_0128283 . ?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0128291 . ?targetMotifMatchRegionMatchBeginMF_0128291 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0128284 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0128292 edam:has_input signature:MF_01282 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17978MF_0128281, 1, (STRLEN(?templateMotifCigarP17978MF_0128281) - STRLEN(REPLACE(?templateMotifCigarP17978MF_0128281, CONCAT('^(?:-*[^-]){', STR(((228 - ?templateMotifSequenceMatchBeginPositionP1797882) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17978MF_0128283, 1, (STRLEN(?targetMotifMatchCigarP17978MF_0128283) - STRLEN(REPLACE(?targetMotifMatchCigarP17978MF_0128283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17978MF_0128283, 1, (STRLEN(?targetMotifMatchCigarP17978MF_0128283) - STRLEN(REPLACE(?targetMotifMatchCigarP17978MF_0128283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) . BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0128284) - 1) AS ?thisPositionOn33) . BIND(?thisPositionOn33 AS ?thisPositionOn34) . BIND(?this AS ?pfs1t95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse30) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01282a28')) AS ?annotation28) . BIND(?this AS ?pfs27) . } } "xsd:string |
| http://purl.uniprot.org/unirules/MF_01282 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01282#construct |