| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-42 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-18 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-61 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-32 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-101 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-2 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-35 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-50 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-102 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-108 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-104 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-98 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-106 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-59 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-110 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-109 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_01397#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01397#construct-template-99 |
| http://purl.uniprot.org/unirules/MF_01397#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01397#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01397#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01397#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01397#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01397#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:505595 up:source unirule:MF_01397 .
_:505596 up:source unirule:MF_01397 .
_:505597 up:source unirule:MF_01397 .
_:505598 up:source unirule:MF_01397 .
_:505599 up:source unirule:MF_01397 .
_:505600 up:source unirule:MF_01397 .
_:505601 up:source unirule:MF_01397 .
_:505602 up:source unirule:MF_01397 .
_:505603 up:source unirule:MF_01397 .
_:505604 up:source unirule:MF_01397 .
_:505605 up:source unirule:MF_01397 .
_:505606 up:source unirule:MF_01397 .
_:505607 up:source unirule:MF_01397 .
_:505608 up:source unirule:MF_01397 .
_:505609 up:source unirule:MF_01397 .
_:505610 up:source unirule:MF_01397 .
_:505611 up:source unirule:MF_01397 .
_:505612 up:source unirule:MF_01397 .
_:505613 up:source unirule:MF_01397 .
_:505614 up:source unirule:MF_01397 .
_:505615 up:source unirule:MF_01397 .
_:505616 up:source unirule:MF_01397 .
_:505617 up:source unirule:MF_01397 .
_:505618 up:source unirule:MF_01397 .
_:505619 up:source unirule:MF_01397 .
_:505620 up:source unirule:MF_01397 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation11 ,
?annotation12 ;
up:classifiedWith GO:0005886 ,
GO:0016655 ,
GO:0050136 ,
keyword:1003 ,
keyword:1278 ,
keyword:472 ,
keyword:511 ,
keyword:520 ,
keyword:813 ,
keyword:830 ,
keyword:874 ,
keyword:963 ,
keyword:997 ;
up:recommendedName ?name0 .
?name0 up:ecName '7.1.1.-' ;
up:fullName 'NADH-quinone oxidoreductase subunit C/D' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'NADH dehydrogenase I subunit C/D' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'NDH-1 subunit C/D' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'NUO3/NUO4' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'nuoC' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'NDH-1 is composed of 13 different subunits. Subunits NuoB, CD, E, F, and G constitute the peripheral sector of the complex.' .
?annotation9 a up:Subcellular_Location_Annotation .
?annotation9li10 up:cellularComponent .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'In the N-terminal section; belongs to the complex I 30 kDa subunit family.' .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'In the C-terminal section; belongs to the complex I 49 kDa subunit family.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'NADH dehydrogenase I subunit C' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'NADH dehydrogenase I subunit D' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
_:505621 a rdf:Statement ;
up:attribution _:505595 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:505622 a rdf:Statement ;
up:attribution _:505596 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:505623 a rdf:Statement ;
up:attribution _:505597 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:505624 a rdf:Statement ;
up:attribution _:505598 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:505625 a rdf:Statement ;
up:attribution _:505599 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:505626 a rdf:Statement ;
up:attribution _:505600 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:505627 a rdf:Statement ;
up:attribution _:505601 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:505628 a rdf:Statement ;
up:attribution _:505602 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:505629 a rdf:Statement ;
up:attribution _:505603 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:505630 a rdf:Statement ;
up:attribution _:505604 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:505631 a rdf:Statement ;
up:attribution _:505605 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:505632 a rdf:Statement ;
up:attribution _:505606 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:505633 a rdf:Statement ;
up:attribution _:505607 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:505634 a rdf:Statement ;
up:attribution _:505608 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:505635 a rdf:Statement ;
up:attribution _:505609 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:505636 a rdf:Statement ;
up:attribution _:505610 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:505637 a rdf:Statement ;
up:attribution _:505611 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:505638 a rdf:Statement ;
up:attribution _:505612 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:874 .
_:505639 a rdf:Statement ;
up:attribution _:505613 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1278 .
_:505640 a rdf:Statement ;
up:attribution _:505614 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:505641 a rdf:Statement ;
up:attribution _:505615 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:830 .
_:505642 a rdf:Statement ;
up:attribution _:505616 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016655 .
_:505643 a rdf:Statement ;
up:attribution _:505617 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050136 .
_:505644 a rdf:Statement ;
up:attribution _:505618 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:505645 a rdf:Statement ;
up:source unirule:MF_01397 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:505646 a rdf:Statement ;
up:attribution _:505619 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:505647 a rdf:Statement ;
up:source unirule:MF_01397 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:505648 a rdf:Statement ;
up:attribution _:505620 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01397
#Rule MF_01397 Created by:? on:2009-01-29 Modified by:Catherine Rivoire on:2025-09-18
VALUES ?supertaxon25 {taxon:187857 taxon:200643 taxon:28221 taxon:72294}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01397 .
?thisOrganism rdfs:subClassOf+ ?supertaxon25 .
BIND(URI(CONCAT(STR(?this), '#MF_01397a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01397a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01397a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01397a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01397a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01397a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01397a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01397a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01397a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01397a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch30 faldo:location ?templateMotifSequenceMatchRegionQ6MIR531 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6MIR533 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6MIR5MF_0139726 .
?templateMotifSequenceMatchRegionQ6MIR531 faldo:begin ?templateMotifSequenceMatchBeginQ6MIR532 .
?templateMotifSequenceMatchBeginQ6MIR532 faldo:position ?templateMotifSequenceMatchBeginPositionQ6MIR527 ;
faldo:reference isoform:Q6MIR5-1 .
?templateMotifSequenceProfileAlignmentOperationQ6MIR533 edam:has_input signature:MF_01397 ;
rdf:type edam:operation_0300 .
?targetMotifMatch34 faldo:location ?targetMotifMatchRegionMatch35 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0139737 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6MIR5MF_0139728 .
?targetMotifMatchRegionMatch35 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0139736 .
?targetMotifMatchRegionMatchBeginMF_0139736 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0139729 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0139737 edam:has_input signature:MF_01397 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6MIR5MF_0139726, 1, (STRLEN(?templateMotifCigarQ6MIR5MF_0139726) - STRLEN(REPLACE(?templateMotifCigarQ6MIR5MF_0139726, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionQ6MIR527) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6MIR5MF_0139728, 1, (STRLEN(?targetMotifMatchCigarQ6MIR5MF_0139728) - STRLEN(REPLACE(?targetMotifMatchCigarQ6MIR5MF_0139728, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6MIR5MF_0139728, 1, (STRLEN(?targetMotifMatchCigarQ6MIR5MF_0139728) - STRLEN(REPLACE(?targetMotifMatchCigarQ6MIR5MF_0139728, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) .
BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0139729) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) .
BIND(URI(CONCAT(STR(?this), '#MF_01397a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionQ6MIR546 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6MIR548 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6MIR5MF_0139741 .
?templateMotifSequenceMatchRegionQ6MIR546 faldo:begin ?templateMotifSequenceMatchBeginQ6MIR547 .
?templateMotifSequenceMatchBeginQ6MIR547 faldo:position ?templateMotifSequenceMatchBeginPositionQ6MIR542 ;
faldo:reference isoform:Q6MIR5-1 .
?templateMotifSequenceProfileAlignmentOperationQ6MIR548 edam:has_input signature:MF_01397 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0139752 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6MIR5MF_0139743 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0139751 .
?targetMotifMatchRegionMatchBeginMF_0139751 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0139744 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0139752 edam:has_input signature:MF_01397 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6MIR5MF_0139741, 1, (STRLEN(?templateMotifCigarQ6MIR5MF_0139741) - STRLEN(REPLACE(?templateMotifCigarQ6MIR5MF_0139741, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionQ6MIR542) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6MIR5MF_0139743, 1, (STRLEN(?targetMotifMatchCigarQ6MIR5MF_0139743) - STRLEN(REPLACE(?targetMotifMatchCigarQ6MIR5MF_0139743, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6MIR5MF_0139743, 1, (STRLEN(?targetMotifMatchCigarQ6MIR5MF_0139743) - STRLEN(REPLACE(?targetMotifMatchCigarQ6MIR5MF_0139743, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0139744) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((BOUND(?thisPositionOn23) && BOUND(?thisPositionOn24))) .
BIND(URI(CONCAT(STR(?this), '#MF_01397a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_01397 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01397#construct |
