| http://purl.uniprot.org/unirules/MF_01400#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:507075 up:source unirule:MF_01400 .
_:507076 up:source unirule:MF_01400 .
_:507077 up:source unirule:MF_01400 .
_:507078 up:source unirule:MF_01400 .
_:507079 up:source unirule:MF_01400 .
_:507080 up:source unirule:MF_01400 .
_:507081 up:source unirule:MF_01400 .
_:507082 up:source unirule:MF_01400 .
_:507083 up:source unirule:MF_01400 .
_:507084 up:source unirule:MF_01400 .
_:507085 up:source unirule:MF_01400 .
_:507086 up:source unirule:MF_01400 .
_:507087 up:source unirule:MF_01400 .
_:507088 up:source unirule:MF_01400 .
_:507089 up:source unirule:MF_01400 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0033743 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.8.4.12' ;
up:fullName 'Peptide methionine sulfoxide reductase MsrB' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Peptide-methionine (R)-S-oxide reductase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'msrB' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the MsrB Met sulfoxide reductase family.' .
?case6 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs7 up:annotation ?annotation8 ,
?annotation14 ,
?annotation20 ,
?annotation26 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:29105 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:29105 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:29105 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:29105 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
_:507090 a rdf:Statement ;
up:attribution _:507075 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:507091 a rdf:Statement ;
up:attribution _:507076 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:507092 a rdf:Statement ;
up:attribution _:507077 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:507093 a rdf:Statement ;
up:attribution _:507078 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:507094 a rdf:Statement ;
up:attribution _:507079 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:507095 a rdf:Statement ;
up:attribution _:507080 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:507096 a rdf:Statement ;
up:attribution _:507081 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0033743 .
_:507097 a rdf:Statement ;
up:attribution _:507082 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:507098 a rdf:Statement ;
up:attribution _:507083 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:507099 a rdf:Statement ;
up:attribution _:507084 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:507100 a rdf:Statement ;
up:source unirule:MF_01400 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:507101 a rdf:Statement ;
up:attribution _:507085 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:507102 a rdf:Statement ;
up:source unirule:MF_01400 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:507103 a rdf:Statement ;
up:attribution _:507086 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:507104 a rdf:Statement ;
up:source unirule:MF_01400 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:507105 a rdf:Statement ;
up:attribution _:507087 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:507106 a rdf:Statement ;
up:source unirule:MF_01400 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:507107 a rdf:Statement ;
up:attribution _:507088 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:507108 a rdf:Statement ;
up:source unirule:MF_01400 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:507109 a rdf:Statement ;
up:attribution _:507089 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01400
#Rule MF_01400 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon38 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01400 .
?thisOrganism rdfs:subClassOf+ ?supertaxon38 .
BIND(URI(CONCAT(STR(?this), '#MF_01400a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01400a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01400a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01400a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch43 faldo:location ?templateMotifSequenceMatchRegionP0A74644 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A74646 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A746MF_0140039 .
?templateMotifSequenceMatchRegionP0A74644 faldo:begin ?templateMotifSequenceMatchBeginP0A74645 .
?templateMotifSequenceMatchBeginP0A74645 faldo:position ?templateMotifSequenceMatchBeginPositionP0A74640 ;
faldo:reference isoform:P0A746-1 .
?templateMotifSequenceProfileAlignmentOperationP0A74646 edam:has_input signature:MF_01400 ;
rdf:type edam:operation_0300 .
?targetMotifMatch47 faldo:location ?targetMotifMatchRegionMatch48 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0140050 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A746MF_0140041 .
?targetMotifMatchRegionMatch48 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0140049 .
?targetMotifMatchRegionMatchBeginMF_0140049 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0140042 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0140050 edam:has_input signature:MF_01400 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A746MF_0140039, 1, (STRLEN(?templateMotifCigarP0A746MF_0140039) - STRLEN(REPLACE(?templateMotifCigarP0A746MF_0140039, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP0A74640) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A746MF_0140041, 1, (STRLEN(?targetMotifMatchCigarP0A746MF_0140041) - STRLEN(REPLACE(?targetMotifMatchCigarP0A746MF_0140041, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A746MF_0140041, 1, (STRLEN(?targetMotifMatchCigarP0A746MF_0140041) - STRLEN(REPLACE(?targetMotifMatchCigarP0A746MF_0140041, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0140042) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A746MF_0140039, 1, (STRLEN(?templateMotifCigarP0A746MF_0140039) - STRLEN(REPLACE(?templateMotifCigarP0A746MF_0140039, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionP0A74640) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A746MF_0140041, 1, (STRLEN(?targetMotifMatchCigarP0A746MF_0140041) - STRLEN(REPLACE(?targetMotifMatchCigarP0A746MF_0140041, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A746MF_0140041, 1, (STRLEN(?targetMotifMatchCigarP0A746MF_0140041) - STRLEN(REPLACE(?targetMotifMatchCigarP0A746MF_0140041, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0140042) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A746MF_0140039, 1, (STRLEN(?templateMotifCigarP0A746MF_0140039) - STRLEN(REPLACE(?templateMotifCigarP0A746MF_0140039, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionP0A74640) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A746MF_0140041, 1, (STRLEN(?targetMotifMatchCigarP0A746MF_0140041) - STRLEN(REPLACE(?targetMotifMatchCigarP0A746MF_0140041, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A746MF_0140041, 1, (STRLEN(?targetMotifMatchCigarP0A746MF_0140041) - STRLEN(REPLACE(?targetMotifMatchCigarP0A746MF_0140041, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0140042) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A746MF_0140039, 1, (STRLEN(?templateMotifCigarP0A746MF_0140039) - STRLEN(REPLACE(?templateMotifCigarP0A746MF_0140039, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionP0A74640) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A746MF_0140041, 1, (STRLEN(?targetMotifMatchCigarP0A746MF_0140041) - STRLEN(REPLACE(?targetMotifMatchCigarP0A746MF_0140041, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A746MF_0140041, 1, (STRLEN(?targetMotifMatchCigarP0A746MF_0140041) - STRLEN(REPLACE(?targetMotifMatchCigarP0A746MF_0140041, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0140042) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'C')) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionP0A74668 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A74670 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A746MF_0140063 .
?templateMotifSequenceMatchRegionP0A74668 faldo:begin ?templateMotifSequenceMatchBeginP0A74669 .
?templateMotifSequenceMatchBeginP0A74669 faldo:position ?templateMotifSequenceMatchBeginPositionP0A74664 ;
faldo:reference isoform:P0A746-1 .
?templateMotifSequenceProfileAlignmentOperationP0A74670 edam:has_input signature:MF_01400 ;
rdf:type edam:operation_0300 .
?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0140074 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A746MF_0140065 .
?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0140073 .
?targetMotifMatchRegionMatchBeginMF_0140073 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0140066 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0140074 edam:has_input signature:MF_01400 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A746MF_0140063, 1, (STRLEN(?templateMotifCigarP0A746MF_0140063) - STRLEN(REPLACE(?templateMotifCigarP0A746MF_0140063, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionP0A74664) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A746MF_0140065, 1, (STRLEN(?targetMotifMatchCigarP0A746MF_0140065) - STRLEN(REPLACE(?targetMotifMatchCigarP0A746MF_0140065, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A746MF_0140065, 1, (STRLEN(?targetMotifMatchCigarP0A746MF_0140065) - STRLEN(REPLACE(?targetMotifMatchCigarP0A746MF_0140065, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0140066) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs2t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01400a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag78) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag78, ?UNBOUND_VARIABLE) AS ?case6) .
}
"xsd:string |
