| http://purl.uniprot.org/unirules/MF_01417#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:513236 up:source unirule:MF_01417 .
_:513237 up:source unirule:MF_01417 .
_:513238 up:source unirule:MF_01417 .
_:513239 up:source unirule:MF_01417 .
_:513240 up:source unirule:MF_01417 .
_:513241 up:source unirule:MF_01417 .
_:513242 up:source unirule:MF_01417 .
_:513243 up:source unirule:MF_01417 .
_:513244 up:source unirule:MF_01417 .
_:513245 up:source unirule:MF_01417 .
_:513246 up:source unirule:MF_01417 .
_:513247 up:source unirule:MF_01417 .
_:513248 up:source unirule:MF_01417 .
_:513249 up:source unirule:MF_01417 .
_:513250 up:source unirule:MF_01417 .
_:513251 up:source unirule:MF_01417 .
_:513252 up:source unirule:MF_01417 .
_:513253 up:source unirule:MF_01417 .
_:513254 up:source unirule:MF_01417 .
_:513255 up:source unirule:MF_01417 .
_:513256 up:source unirule:MF_01417 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0008295 ,
GO:0008792 ,
keyword:210 ,
keyword:456 ,
keyword:460 ,
keyword:479 ,
keyword:620 ,
keyword:663 ,
keyword:745 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.1.19' ;
up:fullName 'Biosynthetic arginine decarboxylase' ;
up:shortName 'ADC' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'speA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the biosynthesis of agmatine from arginine.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation6 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Amine and polyamine biosynthesis; agmatine biosynthesis; agmatine from L-arginine: step 1/1.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.' .
?case9 up:classifiedWith GO:0009446 ,
keyword:661 .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf ?molecule15 .
?molecule15 rdfs:label 'substrate' .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
_:513257 a rdf:Statement ;
up:attribution _:513236 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:513258 a rdf:Statement ;
up:attribution _:513237 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:513259 a rdf:Statement ;
up:attribution _:513238 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:513260 a rdf:Statement ;
up:attribution _:513239 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:513261 a rdf:Statement ;
up:attribution _:513240 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:513262 a rdf:Statement ;
up:attribution _:513241 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:513263 a rdf:Statement ;
up:attribution _:513242 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:513264 a rdf:Statement ;
up:attribution _:513243 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:513265 a rdf:Statement ;
up:attribution _:513244 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:620 .
_:513266 a rdf:Statement ;
up:attribution _:513245 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:745 .
_:513267 a rdf:Statement ;
up:attribution _:513246 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:513268 a rdf:Statement ;
up:attribution _:513247 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:210 .
_:513269 a rdf:Statement ;
up:attribution _:513248 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:513270 a rdf:Statement ;
up:attribution _:513249 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:513271 a rdf:Statement ;
up:attribution _:513250 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:513272 a rdf:Statement ;
up:attribution _:513251 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008792 .
_:513273 a rdf:Statement ;
up:attribution _:513252 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008295 .
_:513274 a rdf:Statement ;
up:attribution _:513253 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:661 .
_:513275 a rdf:Statement ;
up:attribution _:513254 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009446 .
_:513276 a rdf:Statement ;
up:source unirule:MF_01417 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:513277 a rdf:Statement ;
up:attribution _:513255 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:513278 a rdf:Statement ;
up:source unirule:MF_01417 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:513279 a rdf:Statement ;
up:attribution _:513256 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01417
#Rule MF_01417 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01417 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01417a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01417a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01417a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01417a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01417a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01417a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01417a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch28 faldo:location ?templateMotifSequenceMatchRegionP2117029 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2117031 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP21170MF_0141724 .
?templateMotifSequenceMatchRegionP2117029 faldo:begin ?templateMotifSequenceMatchBeginP2117030 .
?templateMotifSequenceMatchBeginP2117030 faldo:position ?templateMotifSequenceMatchBeginPositionP2117025 ;
faldo:reference isoform:P21170-1 .
?templateMotifSequenceProfileAlignmentOperationP2117031 edam:has_input signature:MF_01417 ;
rdf:type edam:operation_0300 .
?targetMotifMatch32 faldo:location ?targetMotifMatchRegionMatch33 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0141735 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP21170MF_0141726 .
?targetMotifMatchRegionMatch33 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0141734 .
?targetMotifMatchRegionMatchBeginMF_0141734 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0141727 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0141735 edam:has_input signature:MF_01417 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP21170MF_0141724, 1, (STRLEN(?templateMotifCigarP21170MF_0141724) - STRLEN(REPLACE(?templateMotifCigarP21170MF_0141724, CONCAT('^(?:-*[^-]){', STR(((307 - ?templateMotifSequenceMatchBeginPositionP2117025) + 1)), '}'), '')))), '[a-z]', '')) AS ?step136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP21170MF_0141726, 1, (STRLEN(?targetMotifMatchCigarP21170MF_0141726) - STRLEN(REPLACE(?targetMotifMatchCigarP21170MF_0141726, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP21170MF_0141726, 1, (STRLEN(?targetMotifMatchCigarP21170MF_0141726) - STRLEN(REPLACE(?targetMotifMatchCigarP21170MF_0141726, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step136), '}'), '')))), '[^-]', ''))) AS ?step237) .
BIND(((?step237 + ?targetMotifMatchRegionMatchBeginPositionMF_0141727) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP21170MF_0141724, 1, (STRLEN(?templateMotifCigarP21170MF_0141724) - STRLEN(REPLACE(?templateMotifCigarP21170MF_0141724, CONCAT('^(?:-*[^-]){', STR(((317 - ?templateMotifSequenceMatchBeginPositionP2117025) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP21170MF_0141726, 1, (STRLEN(?targetMotifMatchCigarP21170MF_0141726) - STRLEN(REPLACE(?targetMotifMatchCigarP21170MF_0141726, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP21170MF_0141726, 1, (STRLEN(?targetMotifMatchCigarP21170MF_0141726) - STRLEN(REPLACE(?targetMotifMatchCigarP21170MF_0141726, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) .
BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0141727) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse13) .
FILTER (REGEX('[FIVLC][DN][IV]GGGL[GA][VI]D[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01417a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionP2117046 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2117048 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP21170MF_0141741 .
?templateMotifSequenceMatchRegionP2117046 faldo:begin ?templateMotifSequenceMatchBeginP2117047 .
?templateMotifSequenceMatchBeginP2117047 faldo:position ?templateMotifSequenceMatchBeginPositionP2117042 ;
faldo:reference isoform:P21170-1 .
?templateMotifSequenceProfileAlignmentOperationP2117048 edam:has_input signature:MF_01417 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0141752 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP21170MF_0141743 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0141751 .
?targetMotifMatchRegionMatchBeginMF_0141751 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0141744 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0141752 edam:has_input signature:MF_01417 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP21170MF_0141741, 1, (STRLEN(?templateMotifCigarP21170MF_0141741) - STRLEN(REPLACE(?templateMotifCigarP21170MF_0141741, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionP2117042) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP21170MF_0141743, 1, (STRLEN(?targetMotifMatchCigarP21170MF_0141743) - STRLEN(REPLACE(?targetMotifMatchCigarP21170MF_0141743, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP21170MF_0141743, 1, (STRLEN(?targetMotifMatchCigarP21170MF_0141743) - STRLEN(REPLACE(?targetMotifMatchCigarP21170MF_0141743, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0141744) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01417a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon56 {taxon:91347 taxon:206351}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon56 .
BIND(?this AS ?case9) .
}
}
"xsd:string |
