| http://purl.uniprot.org/unirules/MF_01438#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:520937 up:source unirule:MF_01438 .
_:520938 up:source unirule:MF_01438 .
_:520939 up:source unirule:MF_01438 .
_:520940 up:source unirule:MF_01438 .
_:520941 up:source unirule:MF_01438 .
_:520942 up:source unirule:MF_01438 .
_:520943 up:source unirule:MF_01438 .
_:520944 up:source unirule:MF_01438 .
_:520945 up:source unirule:MF_01438 .
_:520946 up:source unirule:MF_01438 .
_:520947 up:source unirule:MF_01438 .
_:520948 up:source unirule:MF_01438 .
_:520949 up:source unirule:MF_01438 .
_:520950 up:source unirule:MF_01438 .
_:520951 up:source unirule:MF_01438 .
_:520952 up:source unirule:MF_01438 .
_:520953 up:source unirule:MF_01438 .
_:520954 up:source unirule:MF_01438 .
_:520955 up:source unirule:MF_01438 .
_:520956 up:source unirule:MF_01438 .
_:520957 up:source unirule:MF_01438 .
_:520958 up:source unirule:MF_01438 .
_:520959 up:source unirule:MF_01438 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0003677 ,
GO:0005524 ,
GO:0006281 ,
GO:0016779 ,
keyword:227 ,
keyword:234 ,
keyword:238 ,
keyword:460 ,
keyword:547 ,
keyword:548 ,
keyword:67 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:fullName 'DNA integrity scanning protein DisA' ;
rdf:type up:Structured_Name .
?name1 up:ecName '2.7.7.85' ;
up:fullName 'Diadenylate cyclase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Cyclic di-AMP synthase' ;
up:shortName 'c-di-AMP synthase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'disA' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homooctamer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DisA family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:30616 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:30616 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:30616 .
_:520960 a rdf:Statement ;
up:attribution _:520937 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:520961 a rdf:Statement ;
up:attribution _:520938 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:520962 a rdf:Statement ;
up:attribution _:520939 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:520963 a rdf:Statement ;
up:attribution _:520940 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:520964 a rdf:Statement ;
up:attribution _:520941 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:520965 a rdf:Statement ;
up:attribution _:520942 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:520966 a rdf:Statement ;
up:attribution _:520943 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:520967 a rdf:Statement ;
up:attribution _:520944 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:520968 a rdf:Statement ;
up:attribution _:520945 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:520969 a rdf:Statement ;
up:attribution _:520946 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:227 .
_:520970 a rdf:Statement ;
up:attribution _:520947 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:234 .
_:520971 a rdf:Statement ;
up:attribution _:520948 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:520972 a rdf:Statement ;
up:attribution _:520949 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:520973 a rdf:Statement ;
up:attribution _:520950 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:520974 a rdf:Statement ;
up:attribution _:520951 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:520975 a rdf:Statement ;
up:attribution _:520952 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:520976 a rdf:Statement ;
up:attribution _:520953 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:520977 a rdf:Statement ;
up:attribution _:520954 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:520978 a rdf:Statement ;
up:attribution _:520955 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016779 .
_:520979 a rdf:Statement ;
up:attribution _:520956 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006281 .
_:520980 a rdf:Statement ;
up:source unirule:MF_01438 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:520981 a rdf:Statement ;
up:attribution _:520957 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:520982 a rdf:Statement ;
up:source unirule:MF_01438 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:520983 a rdf:Statement ;
up:attribution _:520958 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:520984 a rdf:Statement ;
up:source unirule:MF_01438 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:520985 a rdf:Statement ;
up:attribution _:520959 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01438
#Rule MF_01438 Created by:? on:2006-06-07 Modified by:Catherine Rivoire on:2024-03-01
VALUES ?supertaxon32 {taxon:201174 taxon:186817 taxon:186801 taxon:848 taxon:2335}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01438 .
?thisOrganism rdfs:subClassOf+ ?supertaxon32 .
BIND(URI(CONCAT(STR(?this), '#MF_01438a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01438a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01438a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01438a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01438a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01438a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01438a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch37 faldo:location ?templateMotifSequenceMatchRegionQ9WY4338 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WY4340 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WY43MF_0143833 .
?templateMotifSequenceMatchRegionQ9WY4338 faldo:begin ?templateMotifSequenceMatchBeginQ9WY4339 .
?templateMotifSequenceMatchBeginQ9WY4339 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WY4334 ;
faldo:reference isoform:Q9WY43-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WY4340 edam:has_input signature:MF_01438 ;
rdf:type edam:operation_0300 .
?targetMotifMatch41 faldo:location ?targetMotifMatchRegionMatch42 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0143844 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WY43MF_0143835 .
?targetMotifMatchRegionMatch42 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0143843 .
?targetMotifMatchRegionMatchBeginMF_0143843 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0143836 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0143844 edam:has_input signature:MF_01438 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WY43MF_0143833, 1, (STRLEN(?templateMotifCigarQ9WY43MF_0143833) - STRLEN(REPLACE(?templateMotifCigarQ9WY43MF_0143833, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionQ9WY4334) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WY43MF_0143835, 1, (STRLEN(?targetMotifMatchCigarQ9WY43MF_0143835) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WY43MF_0143835, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WY43MF_0143835, 1, (STRLEN(?targetMotifMatchCigarQ9WY43MF_0143835) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WY43MF_0143835, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0143836) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WY43MF_0143833, 1, (STRLEN(?templateMotifCigarQ9WY43MF_0143833) - STRLEN(REPLACE(?templateMotifCigarQ9WY43MF_0143833, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionQ9WY4334) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WY43MF_0143835, 1, (STRLEN(?targetMotifMatchCigarQ9WY43MF_0143835) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WY43MF_0143835, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WY43MF_0143835, 1, (STRLEN(?targetMotifMatchCigarQ9WY43MF_0143835) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WY43MF_0143835, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0143836) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]R[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01438a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch54 faldo:location ?templateMotifSequenceMatchRegionQ9WY4355 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WY4357 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WY43MF_0143850 .
?templateMotifSequenceMatchRegionQ9WY4355 faldo:begin ?templateMotifSequenceMatchBeginQ9WY4356 .
?templateMotifSequenceMatchBeginQ9WY4356 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WY4351 ;
faldo:reference isoform:Q9WY43-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WY4357 edam:has_input signature:MF_01438 ;
rdf:type edam:operation_0300 .
?targetMotifMatch58 faldo:location ?targetMotifMatchRegionMatch59 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0143861 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WY43MF_0143852 .
?targetMotifMatchRegionMatch59 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0143860 .
?targetMotifMatchRegionMatchBeginMF_0143860 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0143853 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0143861 edam:has_input signature:MF_01438 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WY43MF_0143850, 1, (STRLEN(?templateMotifCigarQ9WY43MF_0143850) - STRLEN(REPLACE(?templateMotifCigarQ9WY43MF_0143850, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionQ9WY4351) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WY43MF_0143852, 1, (STRLEN(?targetMotifMatchCigarQ9WY43MF_0143852) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WY43MF_0143852, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WY43MF_0143852, 1, (STRLEN(?targetMotifMatchCigarQ9WY43MF_0143852) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WY43MF_0143852, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) .
BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0143853) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01438a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionQ9WY4370 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WY4372 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WY43MF_0143865 .
?templateMotifSequenceMatchRegionQ9WY4370 faldo:begin ?templateMotifSequenceMatchBeginQ9WY4371 .
?templateMotifSequenceMatchBeginQ9WY4371 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WY4366 ;
faldo:reference isoform:Q9WY43-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WY4372 edam:has_input signature:MF_01438 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0143876 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WY43MF_0143867 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0143875 .
?targetMotifMatchRegionMatchBeginMF_0143875 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0143868 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0143876 edam:has_input signature:MF_01438 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WY43MF_0143865, 1, (STRLEN(?templateMotifCigarQ9WY43MF_0143865) - STRLEN(REPLACE(?templateMotifCigarQ9WY43MF_0143865, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionQ9WY4366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WY43MF_0143867, 1, (STRLEN(?targetMotifMatchCigarQ9WY43MF_0143867) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WY43MF_0143867, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WY43MF_0143867, 1, (STRLEN(?targetMotifMatchCigarQ9WY43MF_0143867) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WY43MF_0143867, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0143868) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER (REGEX('[LV]', SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01438a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon80 {taxon:186817 taxon:186801 taxon:1854 taxon:1883}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon80 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon81 {taxon:186817 taxon:186801 taxon:1854 taxon:1883}
?thisOrganism rdfs:subClassOf+ ?supertaxon81 .
})) .
BIND(?this AS ?case10) .
}
}
"xsd:string |
