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http://purl.uniprot.org/unirules/MF_01483#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_01483#construct-template-list-0
http://purl.uniprot.org/unirules/MF_01483#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:537215 up:source unirule:MF_01483 . _:537216 up:source unirule:MF_01483 . _:537217 up:source unirule:MF_01483 . _:537218 up:source unirule:MF_01483 . _:537219 up:source unirule:MF_01483 . _:537220 up:source unirule:MF_01483 . _:537221 up:source unirule:MF_01483 . _:537222 up:source unirule:MF_01483 . _:537223 up:source unirule:MF_01483 . _:537224 up:source unirule:MF_01483 . _:537225 up:source unirule:MF_01483 . _:537226 up:source unirule:MF_01483 . _:537227 up:source unirule:MF_01483 . _:537228 up:source unirule:MF_01483 . _:537229 up:source unirule:MF_01483 . _:537230 up:source unirule:MF_01483 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation4 ; up:classifiedWith GO:0001000 , GO:0045893 , keyword:804 , keyword:805 ; up:recommendedName ?name0 . ?name0 up:fullName 'RNA polymerase-binding protein RbpA' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'rbpA' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.' . ?annotation3 a up:Subunit_Annotation ; rdfs:comment 'Forms a complex with the RNAP catalytic core and with free principal sigma factors.' . ?annotation4 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the RNA polymerase-binding protein RbpA family.' . ?case5 up:classifiedWith GO:0008270 , keyword:479 , keyword:862 . ?pfs6 up:annotation ?annotation7 , ?annotation13 , ?annotation19 , ?annotation25 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; up:ligand ?ligand10 ; rdf:type up:Binding_Site_Annotation . ?pfsb8 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?ligand10 rdfs:subClassOf chebi:29105 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; up:ligand ?ligand16 ; rdf:type up:Binding_Site_Annotation . ?pfsb14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?ligand16 rdfs:subClassOf chebi:29105 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; up:ligand ?ligand22 ; rdf:type up:Binding_Site_Annotation . ?pfsb20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?ligand22 rdfs:subClassOf chebi:29105 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; up:ligand ?ligand28 ; rdf:type up:Binding_Site_Annotation . ?pfsb26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?ligand28 rdfs:subClassOf chebi:29105 . _:537231 a rdf:Statement ; up:attribution _:537215 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:537232 a rdf:Statement ; up:attribution _:537216 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:537233 a rdf:Statement ; up:attribution _:537217 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:537234 a rdf:Statement ; up:attribution _:537218 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:537235 a rdf:Statement ; up:attribution _:537219 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:537236 a rdf:Statement ; up:attribution _:537220 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:804 . _:537237 a rdf:Statement ; up:attribution _:537221 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:805 . _:537238 a rdf:Statement ; up:attribution _:537222 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0001000 . _:537239 a rdf:Statement ; up:attribution _:537223 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0045893 . _:537240 a rdf:Statement ; up:attribution _:537224 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:537241 a rdf:Statement ; up:attribution _:537225 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:537242 a rdf:Statement ; up:attribution _:537226 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:537243 a rdf:Statement ; up:source unirule:MF_01483 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:537244 a rdf:Statement ; up:attribution _:537227 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:537245 a rdf:Statement ; up:source unirule:MF_01483 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:537246 a rdf:Statement ; up:attribution _:537228 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:537247 a rdf:Statement ; up:source unirule:MF_01483 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:537248 a rdf:Statement ; up:attribution _:537229 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:537249 a rdf:Statement ; up:source unirule:MF_01483 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:537250 a rdf:Statement ; up:attribution _:537230 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01483 #Rule MF_01483 Created by:? on:2013-07-23 Modified by:Edouard de Castro on:2023-01-13 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01483 . ?thisOrganism rdfs:subClassOf+ taxon:201174 . BIND(URI(CONCAT(STR(?this), '#MF_01483a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01483a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01483a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01483a4')) AS ?annotation4) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch35 faldo:location ?templateMotifSequenceMatchRegionQ9RKY036 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9RKY038 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9RKY0MF_0148331 . ?templateMotifSequenceMatchRegionQ9RKY036 faldo:begin ?templateMotifSequenceMatchBeginQ9RKY037 . ?templateMotifSequenceMatchBeginQ9RKY037 faldo:position ?templateMotifSequenceMatchBeginPositionQ9RKY032 ; faldo:reference isoform:Q9RKY0-1 . ?templateMotifSequenceProfileAlignmentOperationQ9RKY038 edam:has_input signature:MF_01483 ; rdf:type edam:operation_0300 . ?targetMotifMatch39 faldo:location ?targetMotifMatchRegionMatch40 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0148342 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9RKY0MF_0148333 . ?targetMotifMatchRegionMatch40 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0148341 . ?targetMotifMatchRegionMatchBeginMF_0148341 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0148334 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0148342 edam:has_input signature:MF_01483 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9RKY0MF_0148331, 1, (STRLEN(?templateMotifCigarQ9RKY0MF_0148331) - STRLEN(REPLACE(?templateMotifCigarQ9RKY0MF_0148331, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionQ9RKY032) + 1)), '}'), '')))), '[a-z]', '')) AS ?step143) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9RKY0MF_0148333, 1, (STRLEN(?targetMotifMatchCigarQ9RKY0MF_0148333) - STRLEN(REPLACE(?targetMotifMatchCigarQ9RKY0MF_0148333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9RKY0MF_0148333, 1, (STRLEN(?targetMotifMatchCigarQ9RKY0MF_0148333) - STRLEN(REPLACE(?targetMotifMatchCigarQ9RKY0MF_0148333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), '')))), '[^-]', ''))) AS ?step244) . BIND(((?step244 + ?targetMotifMatchRegionMatchBeginPositionMF_0148334) - 1) AS ?thisPositionOn11) . BIND(?thisPositionOn11 AS ?thisPositionOn12) . BIND(?this AS ?pfs1t45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse9) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9RKY0MF_0148331, 1, (STRLEN(?templateMotifCigarQ9RKY0MF_0148331) - STRLEN(REPLACE(?templateMotifCigarQ9RKY0MF_0148331, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionQ9RKY032) + 1)), '}'), '')))), '[a-z]', '')) AS ?step146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9RKY0MF_0148333, 1, (STRLEN(?targetMotifMatchCigarQ9RKY0MF_0148333) - STRLEN(REPLACE(?targetMotifMatchCigarQ9RKY0MF_0148333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9RKY0MF_0148333, 1, (STRLEN(?targetMotifMatchCigarQ9RKY0MF_0148333) - STRLEN(REPLACE(?targetMotifMatchCigarQ9RKY0MF_0148333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), '')))), '[^-]', ''))) AS ?step247) . BIND(((?step247 + ?targetMotifMatchRegionMatchBeginPositionMF_0148334) - 1) AS ?thisPositionOn17) . BIND(?thisPositionOn17 AS ?thisPositionOn18) . BIND(?this AS ?pfs1t48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9RKY0MF_0148331, 1, (STRLEN(?templateMotifCigarQ9RKY0MF_0148331) - STRLEN(REPLACE(?templateMotifCigarQ9RKY0MF_0148331, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionQ9RKY032) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9RKY0MF_0148333, 1, (STRLEN(?targetMotifMatchCigarQ9RKY0MF_0148333) - STRLEN(REPLACE(?targetMotifMatchCigarQ9RKY0MF_0148333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9RKY0MF_0148333, 1, (STRLEN(?targetMotifMatchCigarQ9RKY0MF_0148333) - STRLEN(REPLACE(?targetMotifMatchCigarQ9RKY0MF_0148333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) . BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0148334) - 1) AS ?thisPositionOn23) . BIND(?thisPositionOn23 AS ?thisPositionOn24) . BIND(?this AS ?pfs1t51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9RKY0MF_0148331, 1, (STRLEN(?templateMotifCigarQ9RKY0MF_0148331) - STRLEN(REPLACE(?templateMotifCigarQ9RKY0MF_0148331, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionQ9RKY032) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9RKY0MF_0148333, 1, (STRLEN(?targetMotifMatchCigarQ9RKY0MF_0148333) - STRLEN(REPLACE(?targetMotifMatchCigarQ9RKY0MF_0148333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9RKY0MF_0148333, 1, (STRLEN(?targetMotifMatchCigarQ9RKY0MF_0148333) - STRLEN(REPLACE(?targetMotifMatchCigarQ9RKY0MF_0148333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) . BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0148334) - 1) AS ?thisPositionOn29) . BIND(?thisPositionOn29 AS ?thisPositionOn30) . BIND(?this AS ?pfs1t54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) . BIND(?this AS ?pfs6) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag55) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag55, ?UNBOUND_VARIABLE) AS ?case5) . } "xsd:string
http://purl.uniprot.org/unirules/MF_01483http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_01483#construct
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