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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_01498#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01498#construct-template-47 |
| http://purl.uniprot.org/unirules/MF_01498#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01498#construct-template-48 |
| http://purl.uniprot.org/unirules/MF_01498#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01498#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01498#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01498#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01498#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01498#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:544340 up:source unirule:MF_01498 . _:544341 up:source unirule:MF_01498 . _:544342 up:source unirule:MF_01498 . _:544343 up:source unirule:MF_01498 . _:544344 up:source unirule:MF_01498 . _:544345 up:source unirule:MF_01498 . _:544346 up:source unirule:MF_01498 . _:544347 up:source unirule:MF_01498 . _:544348 up:source unirule:MF_01498 . _:544349 up:source unirule:MF_01498 . _:544350 up:source unirule:MF_01498 . _:544351 up:source unirule:MF_01498 . _:544352 up:source unirule:MF_01498 . _:544353 up:source unirule:MF_01498 . _:544354 up:source unirule:MF_01498 . _:544355 up:source unirule:MF_01498 . _:544356 up:source unirule:MF_01498 . _:544357 up:source unirule:MF_01498 . _:544358 up:source unirule:MF_01498 . ?this up:annotation ?annotation2 , ?annotation3 ; up:classifiedWith GO:0000725 , GO:0005524 , keyword:227 , keyword:234 , keyword:238 , keyword:346 , keyword:479 , keyword:547 , keyword:67 ; up:recommendedName ?name0 . ?name0 up:fullName 'DNA repair protein RadA' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'radA' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Plays a role in repairing double-strand DNA breaks, probably involving stabilizing or processing branched DNA or blocked replication forks.' . ?annotation3 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the RecA family. RadA subfamily.' . ?case4 up:classifiedWith keyword:862 , keyword:863 . ?pfs6 up:annotation ?annotation7 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; rdf:type up:Zinc_Finger_Annotation ; rdfs:comment 'C4-type' . ?pfsb8 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfs12 up:annotation ?annotation13 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; rdf:type up:Region_Annotation ; rdfs:comment 'Lon-protease-like' . ?pfsb14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfs18 up:annotation ?annotation19 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; up:ligand ?ligand22 ; rdf:type up:Binding_Site_Annotation . ?pfsb20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?ligand22 rdfs:subClassOf chebi:30616 . ?pfs25 up:annotation ?annotation26 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; rdf:type up:Motif_Annotation ; rdfs:comment 'RadA KNRFG motif' . ?pfsb27 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . _:544359 a rdf:Statement ; up:attribution _:544340 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:544360 a rdf:Statement ; up:attribution _:544341 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:544361 a rdf:Statement ; up:attribution _:544342 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:544362 a rdf:Statement ; up:attribution _:544343 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:544363 a rdf:Statement ; up:attribution _:544344 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:544364 a rdf:Statement ; up:attribution _:544345 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:227 . _:544365 a rdf:Statement ; up:attribution _:544346 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:234 . _:544366 a rdf:Statement ; up:attribution _:544347 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:544367 a rdf:Statement ; up:attribution _:544348 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:544368 a rdf:Statement ; up:attribution _:544349 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:544369 a rdf:Statement ; up:attribution _:544350 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:346 . _:544370 a rdf:Statement ; up:attribution _:544351 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000725 . _:544371 a rdf:Statement ; up:attribution _:544352 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:544372 a rdf:Statement ; up:attribution _:544353 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:544373 a rdf:Statement ; up:attribution _:544354 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object keyword:863 . _:544374 a rdf:Statement ; up:source unirule:MF_01498 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:544375 a rdf:Statement ; up:attribution _:544355 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:544376 a rdf:Statement ; up:source unirule:MF_01498 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:544377 a rdf:Statement ; up:attribution _:544356 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:544378 a rdf:Statement ; up:source unirule:MF_01498 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:544379 a rdf:Statement ; up:attribution _:544357 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:544380 a rdf:Statement ; up:source unirule:MF_01498 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:544381 a rdf:Statement ; up:attribution _:544358 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01498 #Rule MF_01498 Created by:? on:2016-02-11 Modified by:Edouard de Castro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01498 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_01498a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01498a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01498a3')) AS ?annotation3) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch35 faldo:location ?templateMotifSequenceMatchRegionP2455436 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2455438 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24554MF_0149831 . ?templateMotifSequenceMatchRegionP2455436 faldo:begin ?templateMotifSequenceMatchBeginP2455437 . ?templateMotifSequenceMatchBeginP2455437 faldo:position ?templateMotifSequenceMatchBeginPositionP2455432 ; faldo:reference isoform:P24554-1 . ?templateMotifSequenceProfileAlignmentOperationP2455438 edam:has_input signature:MF_01498 ; rdf:type edam:operation_0300 . ?targetMotifMatch39 faldo:location ?targetMotifMatchRegionMatch40 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0149842 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24554MF_0149833 . ?targetMotifMatchRegionMatch40 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0149841 . ?targetMotifMatchRegionMatchBeginMF_0149841 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0149834 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0149842 edam:has_input signature:MF_01498 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFT_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24554MF_0149831, 1, (STRLEN(?templateMotifCigarP24554MF_0149831) - STRLEN(REPLACE(?templateMotifCigarP24554MF_0149831, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP2455432) + 1)), '}'), '')))), '[a-z]', '')) AS ?step143) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24554MF_0149833, 1, (STRLEN(?targetMotifMatchCigarP24554MF_0149833) - STRLEN(REPLACE(?targetMotifMatchCigarP24554MF_0149833, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24554MF_0149833, 1, (STRLEN(?targetMotifMatchCigarP24554MF_0149833) - STRLEN(REPLACE(?targetMotifMatchCigarP24554MF_0149833, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), '')))), '[^-]', ''))) AS ?step244) . BIND(((?step244 + ?targetMotifMatchRegionMatchBeginPositionMF_0149834) - 1) AS ?thisPositionOn10) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24554MF_0149831, 1, (STRLEN(?templateMotifCigarP24554MF_0149831) - STRLEN(REPLACE(?templateMotifCigarP24554MF_0149831, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionP2455432) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24554MF_0149833, 1, (STRLEN(?targetMotifMatchCigarP24554MF_0149833) - STRLEN(REPLACE(?targetMotifMatchCigarP24554MF_0149833, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24554MF_0149833, 1, (STRLEN(?targetMotifMatchCigarP24554MF_0149833) - STRLEN(REPLACE(?targetMotifMatchCigarP24554MF_0149833, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) . BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0149834) - 1) AS ?thisPositionOn11) . BIND(?this AS ?pfs1t47) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) . FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)C[ARNDCQEGHILKMFPSTWYVBZJUOX]{10)C[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)C', SUBSTR(?thisSequenceValue, ?thisPositionOn10, (?thisPositionOn11 - ?thisPositionOn10)))) . BIND(URI(CONCAT(STR(?this), '#MF_01498a7')) AS ?annotation7) . BIND(?this AS ?pfs6) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch52 faldo:location ?templateMotifSequenceMatchRegionP2455453 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2455455 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24554MF_0149848 . ?templateMotifSequenceMatchRegionP2455453 faldo:begin ?templateMotifSequenceMatchBeginP2455454 . ?templateMotifSequenceMatchBeginP2455454 faldo:position ?templateMotifSequenceMatchBeginPositionP2455449 ; faldo:reference isoform:P24554-1 . ?templateMotifSequenceProfileAlignmentOperationP2455455 edam:has_input signature:MF_01498 ; rdf:type edam:operation_0300 . ?targetMotifMatch56 faldo:location ?targetMotifMatchRegionMatch57 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0149859 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24554MF_0149850 . ?targetMotifMatchRegionMatch57 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0149858 . ?targetMotifMatchRegionMatchBeginMF_0149858 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0149851 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0149859 edam:has_input signature:MF_01498 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24554MF_0149848, 1, (STRLEN(?templateMotifCigarP24554MF_0149848) - STRLEN(REPLACE(?templateMotifCigarP24554MF_0149848, CONCAT('^(?:-*[^-]){', STR(((357 - ?templateMotifSequenceMatchBeginPositionP2455449) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24554MF_0149850, 1, (STRLEN(?targetMotifMatchCigarP24554MF_0149850) - STRLEN(REPLACE(?targetMotifMatchCigarP24554MF_0149850, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24554MF_0149850, 1, (STRLEN(?targetMotifMatchCigarP24554MF_0149850) - STRLEN(REPLACE(?targetMotifMatchCigarP24554MF_0149850, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) . BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0149851) - 1) AS ?thisPositionOn16) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn17) . BIND(?this AS ?pfs2t62) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) . FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) . BIND(URI(CONCAT(STR(?this), '#MF_01498a13')) AS ?annotation13) . BIND(?this AS ?pfs12) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionP2455468 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2455470 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24554MF_0149863 . ?templateMotifSequenceMatchRegionP2455468 faldo:begin ?templateMotifSequenceMatchBeginP2455469 . ?templateMotifSequenceMatchBeginP2455469 faldo:position ?templateMotifSequenceMatchBeginPositionP2455464 ; faldo:reference isoform:P24554-1 . ?templateMotifSequenceProfileAlignmentOperationP2455470 edam:has_input signature:MF_01498 ; rdf:type edam:operation_0300 . ?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0149874 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24554MF_0149865 . ?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0149873 . ?targetMotifMatchRegionMatchBeginMF_0149873 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0149866 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0149874 edam:has_input signature:MF_01498 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24554MF_0149863, 1, (STRLEN(?templateMotifCigarP24554MF_0149863) - STRLEN(REPLACE(?templateMotifCigarP24554MF_0149863, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP2455464) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24554MF_0149865, 1, (STRLEN(?targetMotifMatchCigarP24554MF_0149865) - STRLEN(REPLACE(?targetMotifMatchCigarP24554MF_0149865, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24554MF_0149865, 1, (STRLEN(?targetMotifMatchCigarP24554MF_0149865) - STRLEN(REPLACE(?targetMotifMatchCigarP24554MF_0149865, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) . BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0149866) - 1) AS ?thisPositionOn23) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24554MF_0149863, 1, (STRLEN(?templateMotifCigarP24554MF_0149863) - STRLEN(REPLACE(?templateMotifCigarP24554MF_0149863, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionP2455464) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24554MF_0149865, 1, (STRLEN(?targetMotifMatchCigarP24554MF_0149865) - STRLEN(REPLACE(?targetMotifMatchCigarP24554MF_0149865, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24554MF_0149865, 1, (STRLEN(?targetMotifMatchCigarP24554MF_0149865) - STRLEN(REPLACE(?targetMotifMatchCigarP24554MF_0149865, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) . BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0149866) - 1) AS ?thisPositionOn24) . BIND(?this AS ?pfs2t79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) . FILTER (REGEX('[GAS][ARNDCQEGHILKMFPSTWYVBZJUOX]PG[ARNDCQEGHILKMFPSTWYVBZJUOX]GK[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) . BIND(URI(CONCAT(STR(?this), '#MF_01498a19')) AS ?annotation19) . BIND(?this AS ?pfs18) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionP2455485 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2455487 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP24554MF_0149880 . ?templateMotifSequenceMatchRegionP2455485 faldo:begin ?templateMotifSequenceMatchBeginP2455486 . ?templateMotifSequenceMatchBeginP2455486 faldo:position ?templateMotifSequenceMatchBeginPositionP2455481 ; faldo:reference isoform:P24554-1 . ?templateMotifSequenceProfileAlignmentOperationP2455487 edam:has_input signature:MF_01498 ; rdf:type edam:operation_0300 . ?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0149891 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP24554MF_0149882 . ?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0149890 . ?targetMotifMatchRegionMatchBeginMF_0149890 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0149883 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0149891 edam:has_input signature:MF_01498 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24554MF_0149880, 1, (STRLEN(?templateMotifCigarP24554MF_0149880) - STRLEN(REPLACE(?templateMotifCigarP24554MF_0149880, CONCAT('^(?:-*[^-]){', STR(((258 - ?templateMotifSequenceMatchBeginPositionP2455481) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24554MF_0149882, 1, (STRLEN(?targetMotifMatchCigarP24554MF_0149882) - STRLEN(REPLACE(?targetMotifMatchCigarP24554MF_0149882, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24554MF_0149882, 1, (STRLEN(?targetMotifMatchCigarP24554MF_0149882) - STRLEN(REPLACE(?targetMotifMatchCigarP24554MF_0149882, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) . BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0149883) - 1) AS ?thisPositionOn29) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24554MF_0149880, 1, (STRLEN(?templateMotifCigarP24554MF_0149880) - STRLEN(REPLACE(?templateMotifCigarP24554MF_0149880, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionP2455481) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24554MF_0149882, 1, (STRLEN(?targetMotifMatchCigarP24554MF_0149882) - STRLEN(REPLACE(?targetMotifMatchCigarP24554MF_0149882, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24554MF_0149882, 1, (STRLEN(?targetMotifMatchCigarP24554MF_0149882) - STRLEN(REPLACE(?targetMotifMatchCigarP24554MF_0149882, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) . BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0149883) - 1) AS ?thisPositionOn30) . BIND(?this AS ?pfs2t96) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) . FILTER (REGEX('KNR[FY]G', SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)))) . BIND(URI(CONCAT(STR(?this), '#MF_01498a26')) AS ?annotation26) . BIND(?this AS ?pfs25) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag97) . } BIND(IF(BOUND(?tagFT_1), ?caseWithTag97, ?UNBOUND_VARIABLE) AS ?case4) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag98) . } BIND(IF(BOUND(?tagFT_1), ?caseWithTag98, ?UNBOUND_VARIABLE) AS ?case5) . } "xsd:string |
| http://purl.uniprot.org/unirules/MF_01498 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01498#construct |