| http://purl.uniprot.org/unirules/MF_01523#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:551473 up:source unirule:MF_01523 .
_:551474 up:source unirule:MF_01523 .
_:551475 up:source unirule:MF_01523 .
_:551476 up:source unirule:MF_01523 .
_:551477 up:source unirule:MF_01523 .
_:551478 up:source unirule:MF_01523 .
_:551479 up:source unirule:MF_01523 .
_:551480 up:source unirule:MF_01523 .
_:551481 up:source unirule:MF_01523 .
_:551482 up:source unirule:MF_01523 .
_:551483 up:source unirule:MF_01523 .
_:551484 up:source unirule:MF_01523 .
_:551485 up:source unirule:MF_01523 .
_:551486 up:source unirule:MF_01523 .
_:551487 up:source unirule:MF_01523 .
_:551488 up:source unirule:MF_01523 .
_:551489 up:source unirule:MF_01523 .
_:551490 up:source unirule:MF_01523 .
_:551491 up:source unirule:MF_01523 .
_:551492 up:source unirule:MF_01523 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005737 ,
GO:0008990 ,
GO:0031167 ,
keyword:489 ,
keyword:698 ,
keyword:808 ,
keyword:949 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.242' ;
up:fullName 'Ribosomal RNA small subunit methyltransferase J' ;
rdf:type up:Structured_Name .
?name1 up:fullName '16S rRNA m2G1516 methyltransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'rRNA (guanine-N(2)-)-methyltransferase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'rsmJ' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Specifically methylates the guanosine in position 1516 of 16S rRNA.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the methyltransferase superfamily. RsmJ family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:59789 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:59789 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:59789 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:59789 .
_:551493 a rdf:Statement ;
up:attribution _:551473 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:551494 a rdf:Statement ;
up:attribution _:551474 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:551495 a rdf:Statement ;
up:attribution _:551475 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:551496 a rdf:Statement ;
up:attribution _:551476 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:551497 a rdf:Statement ;
up:attribution _:551477 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:551498 a rdf:Statement ;
up:attribution _:551478 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:551499 a rdf:Statement ;
up:attribution _:551479 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:551500 a rdf:Statement ;
up:attribution _:551480 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:551501 a rdf:Statement ;
up:attribution _:551481 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:551502 a rdf:Statement ;
up:attribution _:551482 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:551503 a rdf:Statement ;
up:attribution _:551483 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:698 .
_:551504 a rdf:Statement ;
up:attribution _:551484 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:551505 a rdf:Statement ;
up:attribution _:551485 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:551506 a rdf:Statement ;
up:attribution _:551486 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008990 .
_:551507 a rdf:Statement ;
up:attribution _:551487 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0031167 .
_:551508 a rdf:Statement ;
up:attribution _:551488 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:551509 a rdf:Statement ;
up:source unirule:MF_01523 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:551510 a rdf:Statement ;
up:attribution _:551489 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:551511 a rdf:Statement ;
up:source unirule:MF_01523 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:551512 a rdf:Statement ;
up:attribution _:551490 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:551513 a rdf:Statement ;
up:source unirule:MF_01523 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:551514 a rdf:Statement ;
up:attribution _:551491 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:551515 a rdf:Statement ;
up:source unirule:MF_01523 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:551516 a rdf:Statement ;
up:attribution _:551492 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01523
#Rule MF_01523 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01523 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01523a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01523a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01523a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01523a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01523a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01523a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01523a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch42 faldo:location ?templateMotifSequenceMatchRegionQ7UAV743 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7UAV745 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7UAV7MF_0152338 .
?templateMotifSequenceMatchRegionQ7UAV743 faldo:begin ?templateMotifSequenceMatchBeginQ7UAV744 .
?templateMotifSequenceMatchBeginQ7UAV744 faldo:position ?templateMotifSequenceMatchBeginPositionQ7UAV739 ;
faldo:reference isoform:Q7UAV7-1 .
?templateMotifSequenceProfileAlignmentOperationQ7UAV745 edam:has_input signature:MF_01523 ;
rdf:type edam:operation_0300 .
?targetMotifMatch46 faldo:location ?targetMotifMatchRegionMatch47 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0152349 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7UAV7MF_0152340 .
?targetMotifMatchRegionMatch47 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0152348 .
?targetMotifMatchRegionMatchBeginMF_0152348 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0152341 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0152349 edam:has_input signature:MF_01523 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7UAV7MF_0152338, 1, (STRLEN(?templateMotifCigarQ7UAV7MF_0152338) - STRLEN(REPLACE(?templateMotifCigarQ7UAV7MF_0152338, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionQ7UAV739) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7UAV7MF_0152340, 1, (STRLEN(?targetMotifMatchCigarQ7UAV7MF_0152340) - STRLEN(REPLACE(?targetMotifMatchCigarQ7UAV7MF_0152340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7UAV7MF_0152340, 1, (STRLEN(?targetMotifMatchCigarQ7UAV7MF_0152340) - STRLEN(REPLACE(?targetMotifMatchCigarQ7UAV7MF_0152340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) .
BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0152341) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7UAV7MF_0152338, 1, (STRLEN(?templateMotifCigarQ7UAV7MF_0152338) - STRLEN(REPLACE(?templateMotifCigarQ7UAV7MF_0152338, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionQ7UAV739) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7UAV7MF_0152340, 1, (STRLEN(?targetMotifMatchCigarQ7UAV7MF_0152340) - STRLEN(REPLACE(?targetMotifMatchCigarQ7UAV7MF_0152340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7UAV7MF_0152340, 1, (STRLEN(?targetMotifMatchCigarQ7UAV7MF_0152340) - STRLEN(REPLACE(?targetMotifMatchCigarQ7UAV7MF_0152340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0152341) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('R[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01523a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch59 faldo:location ?templateMotifSequenceMatchRegionQ7UAV760 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7UAV762 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7UAV7MF_0152355 .
?templateMotifSequenceMatchRegionQ7UAV760 faldo:begin ?templateMotifSequenceMatchBeginQ7UAV761 .
?templateMotifSequenceMatchBeginQ7UAV761 faldo:position ?templateMotifSequenceMatchBeginPositionQ7UAV756 ;
faldo:reference isoform:Q7UAV7-1 .
?templateMotifSequenceProfileAlignmentOperationQ7UAV762 edam:has_input signature:MF_01523 ;
rdf:type edam:operation_0300 .
?targetMotifMatch63 faldo:location ?targetMotifMatchRegionMatch64 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0152366 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7UAV7MF_0152357 .
?targetMotifMatchRegionMatch64 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0152365 .
?targetMotifMatchRegionMatchBeginMF_0152365 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0152358 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0152366 edam:has_input signature:MF_01523 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7UAV7MF_0152355, 1, (STRLEN(?templateMotifCigarQ7UAV7MF_0152355) - STRLEN(REPLACE(?templateMotifCigarQ7UAV7MF_0152355, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionQ7UAV756) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7UAV7MF_0152357, 1, (STRLEN(?targetMotifMatchCigarQ7UAV7MF_0152357) - STRLEN(REPLACE(?targetMotifMatchCigarQ7UAV7MF_0152357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7UAV7MF_0152357, 1, (STRLEN(?targetMotifMatchCigarQ7UAV7MF_0152357) - STRLEN(REPLACE(?targetMotifMatchCigarQ7UAV7MF_0152357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0152358) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7UAV7MF_0152355, 1, (STRLEN(?templateMotifCigarQ7UAV7MF_0152355) - STRLEN(REPLACE(?templateMotifCigarQ7UAV7MF_0152355, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionQ7UAV756) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7UAV7MF_0152357, 1, (STRLEN(?targetMotifMatchCigarQ7UAV7MF_0152357) - STRLEN(REPLACE(?targetMotifMatchCigarQ7UAV7MF_0152357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7UAV7MF_0152357, 1, (STRLEN(?targetMotifMatchCigarQ7UAV7MF_0152357) - STRLEN(REPLACE(?targetMotifMatchCigarQ7UAV7MF_0152357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0152358) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER (REGEX('[ED]R', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01523a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch76 faldo:location ?templateMotifSequenceMatchRegionQ7UAV777 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7UAV779 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7UAV7MF_0152372 .
?templateMotifSequenceMatchRegionQ7UAV777 faldo:begin ?templateMotifSequenceMatchBeginQ7UAV778 .
?templateMotifSequenceMatchBeginQ7UAV778 faldo:position ?templateMotifSequenceMatchBeginPositionQ7UAV773 ;
faldo:reference isoform:Q7UAV7-1 .
?templateMotifSequenceProfileAlignmentOperationQ7UAV779 edam:has_input signature:MF_01523 ;
rdf:type edam:operation_0300 .
?targetMotifMatch80 faldo:location ?targetMotifMatchRegionMatch81 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0152383 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7UAV7MF_0152374 .
?targetMotifMatchRegionMatch81 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0152382 .
?targetMotifMatchRegionMatchBeginMF_0152382 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0152375 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0152383 edam:has_input signature:MF_01523 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7UAV7MF_0152372, 1, (STRLEN(?templateMotifCigarQ7UAV7MF_0152372) - STRLEN(REPLACE(?templateMotifCigarQ7UAV7MF_0152372, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionQ7UAV773) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7UAV7MF_0152374, 1, (STRLEN(?targetMotifMatchCigarQ7UAV7MF_0152374) - STRLEN(REPLACE(?targetMotifMatchCigarQ7UAV7MF_0152374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7UAV7MF_0152374, 1, (STRLEN(?targetMotifMatchCigarQ7UAV7MF_0152374) - STRLEN(REPLACE(?targetMotifMatchCigarQ7UAV7MF_0152374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0152375) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7UAV7MF_0152372, 1, (STRLEN(?templateMotifCigarQ7UAV7MF_0152372) - STRLEN(REPLACE(?templateMotifCigarQ7UAV7MF_0152372, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionQ7UAV773) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7UAV7MF_0152374, 1, (STRLEN(?targetMotifMatchCigarQ7UAV7MF_0152374) - STRLEN(REPLACE(?targetMotifMatchCigarQ7UAV7MF_0152374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7UAV7MF_0152374, 1, (STRLEN(?targetMotifMatchCigarQ7UAV7MF_0152374) - STRLEN(REPLACE(?targetMotifMatchCigarQ7UAV7MF_0152374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0152375) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)) = 'SS')) .
BIND(URI(CONCAT(STR(?this), '#MF_01523a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionQ7UAV794 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7UAV796 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7UAV7MF_0152389 .
?templateMotifSequenceMatchRegionQ7UAV794 faldo:begin ?templateMotifSequenceMatchBeginQ7UAV795 .
?templateMotifSequenceMatchBeginQ7UAV795 faldo:position ?templateMotifSequenceMatchBeginPositionQ7UAV790 ;
faldo:reference isoform:Q7UAV7-1 .
?templateMotifSequenceProfileAlignmentOperationQ7UAV796 edam:has_input signature:MF_01523 ;
rdf:type edam:operation_0300 .
?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01523100 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7UAV7MF_0152391 .
?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0152399 .
?targetMotifMatchRegionMatchBeginMF_0152399 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0152392 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01523100 edam:has_input signature:MF_01523 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7UAV7MF_0152389, 1, (STRLEN(?templateMotifCigarQ7UAV7MF_0152389) - STRLEN(REPLACE(?templateMotifCigarQ7UAV7MF_0152389, CONCAT('^(?:-*[^-]){', STR(((171 - ?templateMotifSequenceMatchBeginPositionQ7UAV790) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7UAV7MF_0152391, 1, (STRLEN(?targetMotifMatchCigarQ7UAV7MF_0152391) - STRLEN(REPLACE(?targetMotifMatchCigarQ7UAV7MF_0152391, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7UAV7MF_0152391, 1, (STRLEN(?targetMotifMatchCigarQ7UAV7MF_0152391) - STRLEN(REPLACE(?targetMotifMatchCigarQ7UAV7MF_0152391, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0152392) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01523a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
}
"xsd:string |
