| http://purl.uniprot.org/unirules/MF_01589#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:574830 up:source unirule:MF_01589 .
_:574831 up:source unirule:MF_01589 .
_:574832 up:source unirule:MF_01589 .
_:574833 up:source unirule:MF_01589 .
_:574834 up:source unirule:MF_01589 .
_:574835 up:source unirule:MF_01589 .
_:574836 up:source unirule:MF_01589 .
_:574837 up:source unirule:MF_01589 .
_:574838 up:source unirule:MF_01589 .
_:574839 up:source unirule:MF_01589 .
_:574840 up:source unirule:MF_01589 .
_:574841 up:source unirule:MF_01589 .
_:574842 up:source unirule:MF_01589 .
_:574843 up:source unirule:MF_01589 .
_:574844 up:source unirule:MF_01589 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0016743 ,
GO:1904047 ,
keyword:808 ,
keyword:949 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.3.-' ;
up:fullName 'Carboxy-S-adenosyl-L-methionine synthase' ;
up:shortName 'Cx-SAM synthase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'cmoA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. Cx-SAM synthase family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:59789 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:59789 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:59789 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:59789 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:59789 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:59789 .
_:574845 a rdf:Statement ;
up:attribution _:574830 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:574846 a rdf:Statement ;
up:attribution _:574831 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:574847 a rdf:Statement ;
up:attribution _:574832 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:574848 a rdf:Statement ;
up:attribution _:574833 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:574849 a rdf:Statement ;
up:attribution _:574834 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:574850 a rdf:Statement ;
up:attribution _:574835 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:574851 a rdf:Statement ;
up:attribution _:574836 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:574852 a rdf:Statement ;
up:attribution _:574837 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016743 .
_:574853 a rdf:Statement ;
up:attribution _:574838 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:1904047 .
_:574854 a rdf:Statement ;
up:source unirule:MF_01589 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:574855 a rdf:Statement ;
up:attribution _:574839 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:574856 a rdf:Statement ;
up:source unirule:MF_01589 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:574857 a rdf:Statement ;
up:attribution _:574840 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:574858 a rdf:Statement ;
up:source unirule:MF_01589 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:574859 a rdf:Statement ;
up:attribution _:574841 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:574860 a rdf:Statement ;
up:source unirule:MF_01589 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:574861 a rdf:Statement ;
up:attribution _:574842 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:574862 a rdf:Statement ;
up:source unirule:MF_01589 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:574863 a rdf:Statement ;
up:attribution _:574843 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:574864 a rdf:Statement ;
up:source unirule:MF_01589 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:574865 a rdf:Statement ;
up:attribution _:574844 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01589
#Rule MF_01589 Created by:? on:2007-11-29 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01589 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01589a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01589a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01589a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01589a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch53 faldo:location ?templateMotifSequenceMatchRegionP7629054 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7629056 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76290MF_0158949 .
?templateMotifSequenceMatchRegionP7629054 faldo:begin ?templateMotifSequenceMatchBeginP7629055 .
?templateMotifSequenceMatchBeginP7629055 faldo:position ?templateMotifSequenceMatchBeginPositionP7629050 ;
faldo:reference isoform:P76290-1 .
?templateMotifSequenceProfileAlignmentOperationP7629056 edam:has_input signature:MF_01589 ;
rdf:type edam:operation_0300 .
?targetMotifMatch57 faldo:location ?targetMotifMatchRegionMatch58 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0158960 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76290MF_0158951 .
?targetMotifMatchRegionMatch58 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0158959 .
?targetMotifMatchRegionMatchBeginMF_0158959 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0158952 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0158960 edam:has_input signature:MF_01589 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_0158949, 1, (STRLEN(?templateMotifCigarP76290MF_0158949) - STRLEN(REPLACE(?templateMotifCigarP76290MF_0158949, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP7629050) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_0158951, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158951) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158951, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_0158951, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158951) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158951, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) .
BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0158952) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_0158949, 1, (STRLEN(?templateMotifCigarP76290MF_0158949) - STRLEN(REPLACE(?templateMotifCigarP76290MF_0158949, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP7629050) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_0158951, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158951) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158951, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_0158951, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158951) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158951, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0158952) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]S', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01589a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionP7629071 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7629073 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76290MF_0158966 .
?templateMotifSequenceMatchRegionP7629071 faldo:begin ?templateMotifSequenceMatchBeginP7629072 .
?templateMotifSequenceMatchBeginP7629072 faldo:position ?templateMotifSequenceMatchBeginPositionP7629067 ;
faldo:reference isoform:P76290-1 .
?templateMotifSequenceProfileAlignmentOperationP7629073 edam:has_input signature:MF_01589 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0158977 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76290MF_0158968 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0158976 .
?targetMotifMatchRegionMatchBeginMF_0158976 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0158969 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0158977 edam:has_input signature:MF_01589 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_0158966, 1, (STRLEN(?templateMotifCigarP76290MF_0158966) - STRLEN(REPLACE(?templateMotifCigarP76290MF_0158966, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP7629067) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_0158968, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158968) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_0158968, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158968) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0158969) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_0158966, 1, (STRLEN(?templateMotifCigarP76290MF_0158966) - STRLEN(REPLACE(?templateMotifCigarP76290MF_0158966, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionP7629067) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_0158968, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158968) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_0158968, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158968) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0158969) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)) = 'DN')) .
BIND(URI(CONCAT(STR(?this), '#MF_01589a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP7629088 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7629090 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76290MF_0158983 .
?templateMotifSequenceMatchRegionP7629088 faldo:begin ?templateMotifSequenceMatchBeginP7629089 .
?templateMotifSequenceMatchBeginP7629089 faldo:position ?templateMotifSequenceMatchBeginPositionP7629084 ;
faldo:reference isoform:P76290-1 .
?templateMotifSequenceProfileAlignmentOperationP7629090 edam:has_input signature:MF_01589 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0158994 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76290MF_0158985 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0158993 .
?targetMotifMatchRegionMatchBeginMF_0158993 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0158986 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0158994 edam:has_input signature:MF_01589 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_0158983, 1, (STRLEN(?templateMotifCigarP76290MF_0158983) - STRLEN(REPLACE(?templateMotifCigarP76290MF_0158983, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionP7629084) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_0158985, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158985) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_0158985, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158985) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0158986) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_0158983, 1, (STRLEN(?templateMotifCigarP76290MF_0158983) - STRLEN(REPLACE(?templateMotifCigarP76290MF_0158983, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionP7629084) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_0158985, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158985) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_0158985, 1, (STRLEN(?targetMotifMatchCigarP76290MF_0158985) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_0158985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0158986) - 1) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER (REGEX('D[ILV]', SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01589a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP76290105 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76290107 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76290MF_01589100 .
?templateMotifSequenceMatchRegionP76290105 faldo:begin ?templateMotifSequenceMatchBeginP76290106 .
?templateMotifSequenceMatchBeginP76290106 faldo:position ?templateMotifSequenceMatchBeginPositionP76290101 ;
faldo:reference isoform:P76290-1 .
?templateMotifSequenceProfileAlignmentOperationP76290107 edam:has_input signature:MF_01589 ;
rdf:type edam:operation_0300 .
?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01589111 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76290MF_01589102 .
?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01589110 .
?targetMotifMatchRegionMatchBeginMF_01589110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01589103 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01589111 edam:has_input signature:MF_01589 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_01589100, 1, (STRLEN(?templateMotifCigarP76290MF_01589100) - STRLEN(REPLACE(?templateMotifCigarP76290MF_01589100, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP76290101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_01589102, 1, (STRLEN(?targetMotifMatchCigarP76290MF_01589102) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_01589102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_01589102, 1, (STRLEN(?targetMotifMatchCigarP76290MF_01589102) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_01589102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01589103) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01589a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionP76290120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76290122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76290MF_01589115 .
?templateMotifSequenceMatchRegionP76290120 faldo:begin ?templateMotifSequenceMatchBeginP76290121 .
?templateMotifSequenceMatchBeginP76290121 faldo:position ?templateMotifSequenceMatchBeginPositionP76290116 ;
faldo:reference isoform:P76290-1 .
?templateMotifSequenceProfileAlignmentOperationP76290122 edam:has_input signature:MF_01589 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01589126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76290MF_01589117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01589125 .
?targetMotifMatchRegionMatchBeginMF_01589125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01589118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01589126 edam:has_input signature:MF_01589 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_01589115, 1, (STRLEN(?templateMotifCigarP76290MF_01589115) - STRLEN(REPLACE(?templateMotifCigarP76290MF_01589115, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP76290116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_01589117, 1, (STRLEN(?targetMotifMatchCigarP76290MF_01589117) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_01589117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_01589117, 1, (STRLEN(?targetMotifMatchCigarP76290MF_01589117) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_01589117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_01589118) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01589a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionP76290135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76290137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76290MF_01589130 .
?templateMotifSequenceMatchRegionP76290135 faldo:begin ?templateMotifSequenceMatchBeginP76290136 .
?templateMotifSequenceMatchBeginP76290136 faldo:position ?templateMotifSequenceMatchBeginPositionP76290131 ;
faldo:reference isoform:P76290-1 .
?templateMotifSequenceProfileAlignmentOperationP76290137 edam:has_input signature:MF_01589 ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01589141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76290MF_01589132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01589140 .
?targetMotifMatchRegionMatchBeginMF_01589140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01589133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01589141 edam:has_input signature:MF_01589 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76290MF_01589130, 1, (STRLEN(?templateMotifCigarP76290MF_01589130) - STRLEN(REPLACE(?templateMotifCigarP76290MF_01589130, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionP76290131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76290MF_01589132, 1, (STRLEN(?targetMotifMatchCigarP76290MF_01589132) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_01589132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76290MF_01589132, 1, (STRLEN(?targetMotifMatchCigarP76290MF_01589132) - STRLEN(REPLACE(?targetMotifMatchCigarP76290MF_01589132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_01589133) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01589a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(?this AS ?case6) .
}
}
"xsd:string |
