| http://purl.uniprot.org/unirules/MF_01594#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:576445 up:source unirule:MF_01594 .
_:576446 up:source unirule:MF_01594 .
_:576447 up:source unirule:MF_01594 .
_:576448 up:source unirule:MF_01594 .
_:576449 up:source unirule:MF_01594 .
_:576450 up:source unirule:MF_01594 .
_:576451 up:source unirule:MF_01594 .
_:576452 up:source unirule:MF_01594 .
_:576453 up:source unirule:MF_01594 .
_:576454 up:source unirule:MF_01594 .
_:576455 up:source unirule:MF_01594 .
_:576456 up:source unirule:MF_01594 .
_:576457 up:source unirule:MF_01594 .
_:576458 up:source unirule:MF_01594 .
_:576459 up:source unirule:MF_01594 .
_:576460 up:source unirule:MF_01594 .
_:576461 up:source unirule:MF_01594 .
_:576462 up:source unirule:MF_01594 .
_:576463 up:source unirule:MF_01594 .
_:576464 up:source unirule:MF_01594 .
_:576465 up:source unirule:MF_01594 .
_:576466 up:source unirule:MF_01594 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0004252 ,
GO:0005886 ,
GO:0006508 ,
keyword:1003 ,
keyword:1133 ,
keyword:378 ,
keyword:472 ,
keyword:645 ,
keyword:720 ,
keyword:812 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.4.21.105' ;
up:fullName 'Rhomboid protease GlpG' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Intramembrane serine protease' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'glpG' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Rhomboid-type serine protease that catalyzes intramembrane proteolysis.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase S54 family.' .
?case7 up:classifiedWith keyword:997 .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Active_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?sam21 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane22 faldo:begin ?transmembraneb23 ;
faldo:end ?transmembranee24 .
?transmembraneb23 faldo:position ?transmembranebp25 .
?transmembranee24 faldo:position ?transmembraneep26 .
?keyword27 up:range ?transmembrane22 .
?keyword28 up:range ?transmembrane22 .
?keyword29 up:range ?transmembrane22 .
_:576467 a rdf:Statement ;
up:attribution _:576445 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:576468 a rdf:Statement ;
up:attribution _:576446 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:576469 a rdf:Statement ;
up:attribution _:576447 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:576470 a rdf:Statement ;
up:attribution _:576448 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:576471 a rdf:Statement ;
up:attribution _:576449 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:576472 a rdf:Statement ;
up:attribution _:576450 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:576473 a rdf:Statement ;
up:attribution _:576451 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:576474 a rdf:Statement ;
up:attribution _:576452 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:576475 a rdf:Statement ;
up:attribution _:576453 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:576476 a rdf:Statement ;
up:attribution _:576454 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:645 .
_:576477 a rdf:Statement ;
up:attribution _:576455 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:720 .
_:576478 a rdf:Statement ;
up:attribution _:576456 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:576479 a rdf:Statement ;
up:attribution _:576457 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:576480 a rdf:Statement ;
up:attribution _:576458 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004252 .
_:576481 a rdf:Statement ;
up:attribution _:576459 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006508 .
_:576482 a rdf:Statement ;
up:attribution _:576460 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:576483 a rdf:Statement ;
up:attribution _:576461 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:576484 a rdf:Statement ;
up:source unirule:MF_01594 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:576485 a rdf:Statement ;
up:attribution _:576462 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:576486 a rdf:Statement ;
up:source unirule:MF_01594 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:576487 a rdf:Statement ;
up:attribution _:576463 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:576488 a rdf:Statement ;
up:attribution _:576464 ;
rdf:subject ?sam21 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:576489 a rdf:Statement ;
up:attribution _:576465 ;
rdf:subject ?sam21 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:576490 a rdf:Statement ;
up:attribution _:576466 ;
rdf:subject ?sam21 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01594
#Rule MF_01594 Created by:? on:2008-02-01 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01594 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01594a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01594a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01594a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01594a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01594a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch34 faldo:location ?templateMotifSequenceMatchRegionP0939135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0939137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP09391MF_0159430 .
?templateMotifSequenceMatchRegionP0939135 faldo:begin ?templateMotifSequenceMatchBeginP0939136 .
?templateMotifSequenceMatchBeginP0939136 faldo:position ?templateMotifSequenceMatchBeginPositionP0939131 ;
faldo:reference isoform:P09391-1 .
?templateMotifSequenceProfileAlignmentOperationP0939137 edam:has_input signature:MF_01594 ;
rdf:type edam:operation_0300 .
?targetMotifMatch38 faldo:location ?targetMotifMatchRegionMatch39 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0159441 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP09391MF_0159432 .
?targetMotifMatchRegionMatch39 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0159440 .
?targetMotifMatchRegionMatchBeginMF_0159440 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0159433 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0159441 edam:has_input signature:MF_01594 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP09391MF_0159430, 1, (STRLEN(?templateMotifCigarP09391MF_0159430) - STRLEN(REPLACE(?templateMotifCigarP09391MF_0159430, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionP0939131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP09391MF_0159432, 1, (STRLEN(?targetMotifMatchCigarP09391MF_0159432) - STRLEN(REPLACE(?targetMotifMatchCigarP09391MF_0159432, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP09391MF_0159432, 1, (STRLEN(?targetMotifMatchCigarP09391MF_0159432) - STRLEN(REPLACE(?targetMotifMatchCigarP09391MF_0159432, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), '')))), '[^-]', ''))) AS ?step243) .
BIND(((?step243 + ?targetMotifMatchRegionMatchBeginPositionMF_0159433) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01594a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch49 faldo:location ?templateMotifSequenceMatchRegionP0939150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0939152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP09391MF_0159445 .
?templateMotifSequenceMatchRegionP0939150 faldo:begin ?templateMotifSequenceMatchBeginP0939151 .
?templateMotifSequenceMatchBeginP0939151 faldo:position ?templateMotifSequenceMatchBeginPositionP0939146 ;
faldo:reference isoform:P09391-1 .
?templateMotifSequenceProfileAlignmentOperationP0939152 edam:has_input signature:MF_01594 ;
rdf:type edam:operation_0300 .
?targetMotifMatch53 faldo:location ?targetMotifMatchRegionMatch54 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0159456 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP09391MF_0159447 .
?targetMotifMatchRegionMatch54 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0159455 .
?targetMotifMatchRegionMatchBeginMF_0159455 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0159448 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0159456 edam:has_input signature:MF_01594 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP09391MF_0159445, 1, (STRLEN(?templateMotifCigarP09391MF_0159445) - STRLEN(REPLACE(?templateMotifCigarP09391MF_0159445, CONCAT('^(?:-*[^-]){', STR(((254 - ?templateMotifSequenceMatchBeginPositionP0939146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP09391MF_0159447, 1, (STRLEN(?targetMotifMatchCigarP09391MF_0159447) - STRLEN(REPLACE(?targetMotifMatchCigarP09391MF_0159447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP09391MF_0159447, 1, (STRLEN(?targetMotifMatchCigarP09391MF_0159447) - STRLEN(REPLACE(?targetMotifMatchCigarP09391MF_0159447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0159448) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01594a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p60 .
?p60 skos:narrower .
}
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
{
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p61 .
?p61 skos:narrower .
}
})) .
} UNION {
{
?this up:proteome .
} UNION {
?this up:proteome ?p62 .
?p62 skos:narrower .
}
}
BIND(?this AS ?case8) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane63 ;
up:sequence ?thisSequence .
?samtransmembrane63 up:range ?samtransmembraner64 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner64 faldo:begin ?samtransmembraneb65 ;
faldo:end ?samtransmembranee66 .
?samtransmembraneb65 faldo:position ?samtransmembranebp67 ;
faldo:reference ?thisSequence .
?samtransmembranee66 faldo:position ?samtransmembraneep68 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam21) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01594a27')) AS ?keyword27) .
BIND(URI(CONCAT(STR(?this), '#MF_01594a28')) AS ?keyword28) .
BIND(URI(CONCAT(STR(?this), '#MF_01594a29')) AS ?keyword29) .
}
"xsd:string |
