| http://purl.uniprot.org/unirules/MF_01595#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:576848 up:source unirule:MF_01595 .
_:576849 up:source unirule:MF_01595 .
_:576850 up:source unirule:MF_01595 .
_:576851 up:source unirule:MF_01595 .
_:576852 up:source unirule:MF_01595 .
_:576853 up:source unirule:MF_01595 .
_:576854 up:source unirule:MF_01595 .
_:576855 up:source unirule:MF_01595 .
_:576856 up:source unirule:MF_01595 .
_:576857 up:source unirule:MF_01595 .
_:576858 up:source unirule:MF_01595 .
_:576859 up:source unirule:MF_01595 .
_:576860 up:source unirule:MF_01595 .
_:576861 up:source unirule:MF_01595 .
_:576862 up:source unirule:MF_01595 .
_:576863 up:source unirule:MF_01595 .
_:576864 up:source unirule:MF_01595 .
_:576865 up:source unirule:MF_01595 .
_:576866 up:source unirule:MF_01595 .
_:576867 up:source unirule:MF_01595 .
_:576868 up:source unirule:MF_01595 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0000287 ,
GO:0003723 ,
GO:0004654 ,
GO:0005737 ,
GO:0006402 ,
keyword:460 ,
keyword:479 ,
keyword:548 ,
keyword:694 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.8' ;
up:fullName 'Polyribonucleotide nucleotidyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Polynucleotide phosphorylase' ;
up:shortName 'PNPase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'pnp' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the polyribonucleotide nucleotidyltransferase family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:18420 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:18420 .
_:576869 a rdf:Statement ;
up:attribution _:576848 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:576870 a rdf:Statement ;
up:attribution _:576849 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:576871 a rdf:Statement ;
up:attribution _:576850 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:576872 a rdf:Statement ;
up:attribution _:576851 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:576873 a rdf:Statement ;
up:attribution _:576852 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:576874 a rdf:Statement ;
up:attribution _:576853 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:576875 a rdf:Statement ;
up:attribution _:576854 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:576876 a rdf:Statement ;
up:attribution _:576855 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:576877 a rdf:Statement ;
up:attribution _:576856 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:576878 a rdf:Statement ;
up:attribution _:576857 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:576879 a rdf:Statement ;
up:attribution _:576858 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:576880 a rdf:Statement ;
up:attribution _:576859 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:576881 a rdf:Statement ;
up:attribution _:576860 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:576882 a rdf:Statement ;
up:attribution _:576861 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:576883 a rdf:Statement ;
up:attribution _:576862 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004654 .
_:576884 a rdf:Statement ;
up:attribution _:576863 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:576885 a rdf:Statement ;
up:attribution _:576864 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003723 .
_:576886 a rdf:Statement ;
up:attribution _:576865 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006402 .
_:576887 a rdf:Statement ;
up:attribution _:576866 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:576888 a rdf:Statement ;
up:source unirule:MF_01595 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:576889 a rdf:Statement ;
up:attribution _:576867 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:576890 a rdf:Statement ;
up:source unirule:MF_01595 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:576891 a rdf:Statement ;
up:attribution _:576868 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01595
#Rule MF_01595 Created by:? on:2008-03-19 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01595 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01595a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01595a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01595a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01595a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01595a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01595a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01595a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionP0505530 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0505532 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05055MF_0159525 .
?templateMotifSequenceMatchRegionP0505530 faldo:begin ?templateMotifSequenceMatchBeginP0505531 .
?templateMotifSequenceMatchBeginP0505531 faldo:position ?templateMotifSequenceMatchBeginPositionP0505526 ;
faldo:reference isoform:P05055-1 .
?templateMotifSequenceProfileAlignmentOperationP0505532 edam:has_input signature:MF_01595 ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0159536 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05055MF_0159527 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0159535 .
?targetMotifMatchRegionMatchBeginMF_0159535 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0159528 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0159536 edam:has_input signature:MF_01595 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05055MF_0159525, 1, (STRLEN(?templateMotifCigarP05055MF_0159525) - STRLEN(REPLACE(?templateMotifCigarP05055MF_0159525, CONCAT('^(?:-*[^-]){', STR(((486 - ?templateMotifSequenceMatchBeginPositionP0505526) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05055MF_0159527, 1, (STRLEN(?targetMotifMatchCigarP05055MF_0159527) - STRLEN(REPLACE(?targetMotifMatchCigarP05055MF_0159527, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05055MF_0159527, 1, (STRLEN(?targetMotifMatchCigarP05055MF_0159527) - STRLEN(REPLACE(?targetMotifMatchCigarP05055MF_0159527, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0159528) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01595a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionP0505545 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0505547 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05055MF_0159540 .
?templateMotifSequenceMatchRegionP0505545 faldo:begin ?templateMotifSequenceMatchBeginP0505546 .
?templateMotifSequenceMatchBeginP0505546 faldo:position ?templateMotifSequenceMatchBeginPositionP0505541 ;
faldo:reference isoform:P05055-1 .
?templateMotifSequenceProfileAlignmentOperationP0505547 edam:has_input signature:MF_01595 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0159551 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05055MF_0159542 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0159550 .
?targetMotifMatchRegionMatchBeginMF_0159550 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0159543 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0159551 edam:has_input signature:MF_01595 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05055MF_0159540, 1, (STRLEN(?templateMotifCigarP05055MF_0159540) - STRLEN(REPLACE(?templateMotifCigarP05055MF_0159540, CONCAT('^(?:-*[^-]){', STR(((492 - ?templateMotifSequenceMatchBeginPositionP0505541) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05055MF_0159542, 1, (STRLEN(?targetMotifMatchCigarP05055MF_0159542) - STRLEN(REPLACE(?targetMotifMatchCigarP05055MF_0159542, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05055MF_0159542, 1, (STRLEN(?targetMotifMatchCigarP05055MF_0159542) - STRLEN(REPLACE(?targetMotifMatchCigarP05055MF_0159542, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0159543) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01595a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(?this AS ?case10) .
}
}
"xsd:string |
