| http://purl.uniprot.org/unirules/MF_01611#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:582733 up:source unirule:MF_01611 .
_:582734 up:source unirule:MF_01611 .
_:582735 up:source unirule:MF_01611 .
_:582736 up:source unirule:MF_01611 .
_:582737 up:source unirule:MF_01611 .
_:582738 up:source unirule:MF_01611 .
_:582739 up:source unirule:MF_01611 .
_:582740 up:source unirule:MF_01611 .
_:582741 up:source unirule:MF_01611 .
_:582742 up:source unirule:MF_01611 .
_:582743 up:source unirule:MF_01611 .
_:582744 up:source unirule:MF_01611 .
_:582745 up:source unirule:MF_01611 .
_:582746 up:source unirule:MF_01611 .
_:582747 up:source unirule:MF_01611 .
_:582748 up:source unirule:MF_01611 .
_:582749 up:source unirule:MF_01611 .
_:582750 up:source unirule:MF_01611 .
_:582751 up:source unirule:MF_01611 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0016841 ,
keyword:456 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.3.1.32' ;
up:fullName '7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'FO synthase subunit 1' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'cofG' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the radical-mediated synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) from 5-amino-5-(4-hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; coenzyme F0 biosynthesis.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'The FO synthase complex consists of two subunits, CofG and CofH.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the radical SAM superfamily. CofG family.' .
?case9 up:classifiedWith GO:0005506 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 ,
keyword:949 .
?pfs10 up:annotation ?annotation11 ,
?annotation17 ,
?annotation23 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:49883 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:49883 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:49883 .
_:582752 a rdf:Statement ;
up:attribution _:582733 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:582753 a rdf:Statement ;
up:attribution _:582734 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:582754 a rdf:Statement ;
up:attribution _:582735 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:582755 a rdf:Statement ;
up:attribution _:582736 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:582756 a rdf:Statement ;
up:attribution _:582737 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:582757 a rdf:Statement ;
up:attribution _:582738 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:582758 a rdf:Statement ;
up:attribution _:582739 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:582759 a rdf:Statement ;
up:attribution _:582740 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:582760 a rdf:Statement ;
up:attribution _:582741 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:582761 a rdf:Statement ;
up:attribution _:582742 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016841 .
_:582762 a rdf:Statement ;
up:attribution _:582743 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:582763 a rdf:Statement ;
up:attribution _:582744 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:582764 a rdf:Statement ;
up:attribution _:582745 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:582765 a rdf:Statement ;
up:attribution _:582746 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:582766 a rdf:Statement ;
up:attribution _:582747 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:582767 a rdf:Statement ;
up:attribution _:582748 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:582768 a rdf:Statement ;
up:source unirule:MF_01611 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:582769 a rdf:Statement ;
up:attribution _:582749 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:582770 a rdf:Statement ;
up:source unirule:MF_01611 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:582771 a rdf:Statement ;
up:attribution _:582750 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:582772 a rdf:Statement ;
up:source unirule:MF_01611 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:582773 a rdf:Statement ;
up:attribution _:582751 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01611
#Rule MF_01611 Created by:? on:2005-06-13 Modified by:Catherine Rivoire on:2024-10-08
VALUES ?supertaxon29 {taxon:1117 taxon:3366610}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01611 .
?thisOrganism rdfs:subClassOf+ ?supertaxon29 .
BIND(URI(CONCAT(STR(?this), '#MF_01611a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01611a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01611a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01611a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01611a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01611a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01611a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch34 faldo:location ?templateMotifSequenceMatchRegionQ5788835 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5788837 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57888MF_0161130 .
?templateMotifSequenceMatchRegionQ5788835 faldo:begin ?templateMotifSequenceMatchBeginQ5788836 .
?templateMotifSequenceMatchBeginQ5788836 faldo:position ?templateMotifSequenceMatchBeginPositionQ5788831 ;
faldo:reference isoform:Q57888-1 .
?templateMotifSequenceProfileAlignmentOperationQ5788837 edam:has_input signature:MF_01611 ;
rdf:type edam:operation_0300 .
?targetMotifMatch38 faldo:location ?targetMotifMatchRegionMatch39 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0161141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57888MF_0161132 .
?targetMotifMatchRegionMatch39 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0161140 .
?targetMotifMatchRegionMatchBeginMF_0161140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0161133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0161141 edam:has_input signature:MF_01611 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57888MF_0161130, 1, (STRLEN(?templateMotifCigarQ57888MF_0161130) - STRLEN(REPLACE(?templateMotifCigarQ57888MF_0161130, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionQ5788831) + 1)), '}'), '')))), '[a-z]', '')) AS ?step142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57888MF_0161132, 1, (STRLEN(?targetMotifMatchCigarQ57888MF_0161132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57888MF_0161132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57888MF_0161132, 1, (STRLEN(?targetMotifMatchCigarQ57888MF_0161132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57888MF_0161132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), '')))), '[^-]', ''))) AS ?step243) .
BIND(((?step243 + ?targetMotifMatchRegionMatchBeginPositionMF_0161133) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57888MF_0161130, 1, (STRLEN(?templateMotifCigarQ57888MF_0161130) - STRLEN(REPLACE(?templateMotifCigarQ57888MF_0161130, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionQ5788831) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57888MF_0161132, 1, (STRLEN(?targetMotifMatchCigarQ57888MF_0161132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57888MF_0161132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57888MF_0161132, 1, (STRLEN(?targetMotifMatchCigarQ57888MF_0161132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57888MF_0161132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0161133) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57888MF_0161130, 1, (STRLEN(?templateMotifCigarQ57888MF_0161130) - STRLEN(REPLACE(?templateMotifCigarQ57888MF_0161130, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionQ5788831) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57888MF_0161132, 1, (STRLEN(?targetMotifMatchCigarQ57888MF_0161132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57888MF_0161132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57888MF_0161132, 1, (STRLEN(?targetMotifMatchCigarQ57888MF_0161132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57888MF_0161132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0161133) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'C')) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag51) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag51, ?UNBOUND_VARIABLE) AS ?case9) .
}
"xsd:string |
