| http://purl.uniprot.org/unirules/MF_01612#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:583105 up:source unirule:MF_01612 .
_:583106 up:source unirule:MF_01612 .
_:583107 up:source unirule:MF_01612 .
_:583108 up:source unirule:MF_01612 .
_:583109 up:source unirule:MF_01612 .
_:583110 up:source unirule:MF_01612 .
_:583111 up:source unirule:MF_01612 .
_:583112 up:source unirule:MF_01612 .
_:583113 up:source unirule:MF_01612 .
_:583114 up:source unirule:MF_01612 .
_:583115 up:source unirule:MF_01612 .
_:583116 up:source unirule:MF_01612 .
_:583117 up:source unirule:MF_01612 .
_:583118 up:source unirule:MF_01612 .
_:583119 up:source unirule:MF_01612 .
_:583120 up:source unirule:MF_01612 .
_:583121 up:source unirule:MF_01612 .
_:583122 up:source unirule:MF_01612 .
_:583123 up:source unirule:MF_01612 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0016765 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.5.1.147' ;
up:fullName '5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'FO synthase subunit 2' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'cofH' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the radical-mediated synthesis of 5-amino-5-(4-hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil from 5-amino-6-(D-ribitylamino)uracil and L-tyrosine.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; coenzyme F0 biosynthesis.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'The FO synthase complex consists of two subunits, CofG and CofH.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the radical SAM superfamily. CofH family.' .
?case9 up:classifiedWith GO:0005506 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 ,
keyword:949 .
?pfs10 up:annotation ?annotation11 ,
?annotation17 ,
?annotation23 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:49883 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:49883 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:49883 .
_:583124 a rdf:Statement ;
up:attribution _:583105 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:583125 a rdf:Statement ;
up:attribution _:583106 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:583126 a rdf:Statement ;
up:attribution _:583107 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:583127 a rdf:Statement ;
up:attribution _:583108 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:583128 a rdf:Statement ;
up:attribution _:583109 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:583129 a rdf:Statement ;
up:attribution _:583110 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:583130 a rdf:Statement ;
up:attribution _:583111 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:583131 a rdf:Statement ;
up:attribution _:583112 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:583132 a rdf:Statement ;
up:attribution _:583113 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:583133 a rdf:Statement ;
up:attribution _:583114 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016765 .
_:583134 a rdf:Statement ;
up:attribution _:583115 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:583135 a rdf:Statement ;
up:attribution _:583116 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:583136 a rdf:Statement ;
up:attribution _:583117 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:583137 a rdf:Statement ;
up:attribution _:583118 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:583138 a rdf:Statement ;
up:attribution _:583119 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:583139 a rdf:Statement ;
up:attribution _:583120 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:583140 a rdf:Statement ;
up:source unirule:MF_01612 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:583141 a rdf:Statement ;
up:attribution _:583121 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:583142 a rdf:Statement ;
up:source unirule:MF_01612 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:583143 a rdf:Statement ;
up:attribution _:583122 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:583144 a rdf:Statement ;
up:source unirule:MF_01612 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:583145 a rdf:Statement ;
up:attribution _:583123 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01612
#Rule MF_01612 Created by:? on:2005-06-13 Modified by:Catherine Rivoire on:2024-10-08
VALUES ?supertaxon29 {taxon:1117 taxon:3366610}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01612 .
?thisOrganism rdfs:subClassOf+ ?supertaxon29 .
BIND(URI(CONCAT(STR(?this), '#MF_01612a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01612a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01612a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01612a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01612a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01612a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01612a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch34 faldo:location ?templateMotifSequenceMatchRegionQ5882635 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5882637 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58826MF_0161230 .
?templateMotifSequenceMatchRegionQ5882635 faldo:begin ?templateMotifSequenceMatchBeginQ5882636 .
?templateMotifSequenceMatchBeginQ5882636 faldo:position ?templateMotifSequenceMatchBeginPositionQ5882631 ;
faldo:reference isoform:Q58826-1 .
?templateMotifSequenceProfileAlignmentOperationQ5882637 edam:has_input signature:MF_01612 ;
rdf:type edam:operation_0300 .
?targetMotifMatch38 faldo:location ?targetMotifMatchRegionMatch39 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0161241 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58826MF_0161232 .
?targetMotifMatchRegionMatch39 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0161240 .
?targetMotifMatchRegionMatchBeginMF_0161240 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0161233 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0161241 edam:has_input signature:MF_01612 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58826MF_0161230, 1, (STRLEN(?templateMotifCigarQ58826MF_0161230) - STRLEN(REPLACE(?templateMotifCigarQ58826MF_0161230, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionQ5882631) + 1)), '}'), '')))), '[a-z]', '')) AS ?step142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58826MF_0161232, 1, (STRLEN(?targetMotifMatchCigarQ58826MF_0161232) - STRLEN(REPLACE(?targetMotifMatchCigarQ58826MF_0161232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58826MF_0161232, 1, (STRLEN(?targetMotifMatchCigarQ58826MF_0161232) - STRLEN(REPLACE(?targetMotifMatchCigarQ58826MF_0161232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), '')))), '[^-]', ''))) AS ?step243) .
BIND(((?step243 + ?targetMotifMatchRegionMatchBeginPositionMF_0161233) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58826MF_0161230, 1, (STRLEN(?templateMotifCigarQ58826MF_0161230) - STRLEN(REPLACE(?templateMotifCigarQ58826MF_0161230, CONCAT('^(?:-*[^-]){', STR(((63 - ?templateMotifSequenceMatchBeginPositionQ5882631) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58826MF_0161232, 1, (STRLEN(?targetMotifMatchCigarQ58826MF_0161232) - STRLEN(REPLACE(?targetMotifMatchCigarQ58826MF_0161232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58826MF_0161232, 1, (STRLEN(?targetMotifMatchCigarQ58826MF_0161232) - STRLEN(REPLACE(?targetMotifMatchCigarQ58826MF_0161232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0161233) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58826MF_0161230, 1, (STRLEN(?templateMotifCigarQ58826MF_0161230) - STRLEN(REPLACE(?templateMotifCigarQ58826MF_0161230, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionQ5882631) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58826MF_0161232, 1, (STRLEN(?targetMotifMatchCigarQ58826MF_0161232) - STRLEN(REPLACE(?targetMotifMatchCigarQ58826MF_0161232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58826MF_0161232, 1, (STRLEN(?targetMotifMatchCigarQ58826MF_0161232) - STRLEN(REPLACE(?targetMotifMatchCigarQ58826MF_0161232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0161233) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'C')) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag51) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag51, ?UNBOUND_VARIABLE) AS ?case9) .
}
"xsd:string |
